KEGG   PATHWAY: pop00710
Entry
pop00710                    Pathway                                
Name
Carbon fixation by Calvin cycle - Populus trichocarpa (black cottonwood)
Class
Metabolism; Energy metabolism
Pathway map
pop00710  Carbon fixation by Calvin cycle
pop00710

Module
pop_M00165  Reductive pentose phosphate cycle (Calvin cycle) [PATH:pop00710]
pop_M00168  CAM (Crassulacean acid metabolism), dark [PATH:pop00710]
pop_M00169  CAM (Crassulacean acid metabolism), light [PATH:pop00710]
pop_M00170  C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type [PATH:pop00710]
pop_M00171  C4-dicarboxylic acid cycle, NAD - malic enzyme type [PATH:pop00710]
pop_M00172  C4-dicarboxylic acid cycle, NADP - malic enzyme type [PATH:pop00710]
Organism
Populus trichocarpa (black cottonwood) [GN:pop]
Gene
4929677  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
127904144  ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
7477424  ribulose bisphosphate carboxylase small subunit, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
18107762  ribulose bisphosphate carboxylase small subunit, chloroplastic 3 [KO:K01602] [EC:4.1.1.39]
18099496  ribulose bisphosphate carboxylase small subunit, chloroplastic [KO:K01602] [EC:4.1.1.39]
7460679  phosphoglycerate kinase, cytosolic [KO:K00927] [EC:2.7.2.3]
7496585  phosphoglycerate kinase, chloroplastic [KO:K00927] [EC:2.7.2.3]
7467630  uncharacterized protein LOC7467630 isoform X1 [KO:K00927] [EC:2.7.2.3]
7481598  phosphoglycerate kinase, chloroplastic [KO:K00927] [EC:2.7.2.3]
7492954  phosphoglycerate kinase, cytosolic [KO:K00927] [EC:2.7.2.3]
7467691  glyceraldehyde-3-phosphate dehydrogenase, cytosolic [KO:K00134] [EC:1.2.1.12]
7460038  glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [KO:K00134] [EC:1.2.1.12]
7484457  glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic [KO:K00134] [EC:1.2.1.12]
7460675  glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [KO:K00134] [EC:1.2.1.12]
7454689  glyceraldehyde-3-phosphate dehydrogenase 2, cytosolic isoform X1 [KO:K00134] [EC:1.2.1.12]
7480933  glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic isoform X1 [KO:K00134] [EC:1.2.1.12]
7481599  glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [KO:K00134] [EC:1.2.1.12]
7494712  glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic [KO:K05298] [EC:1.2.1.13]
7457998  glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic [KO:K05298] [EC:1.2.1.13]
7474559  glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic isoform X1 [KO:K05298] [EC:1.2.1.13]
112326437  glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic-like [KO:K05298] [EC:1.2.1.13]
7457647  fructose-bisphosphate aldolase 5, cytosolic [KO:K01623] [EC:4.1.2.13]
7463993  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
7459807  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
7470027  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
7488380  fructose-bisphosphate aldolase 3, chloroplastic [KO:K01623] [EC:4.1.2.13]
7488954  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
18100476  fructose-bisphosphate aldolase 6, cytosolic [KO:K01623] [EC:4.1.2.13]
18103531  fructose-bisphosphate aldolase 5, cytosolic [KO:K01623] [EC:4.1.2.13]
7495527  fructose-bisphosphate aldolase 1, chloroplastic [KO:K01623] [EC:4.1.2.13]
7467822  fructose-1,6-bisphosphatase, cytosolic [KO:K03841] [EC:3.1.3.11]
7492465  fructose-1,6-bisphosphatase, cytosolic isoform X1 [KO:K03841] [EC:3.1.3.11]
7472525  uncharacterized protein LOC7472525 [KO:K03841] [EC:3.1.3.11]
112324528  LOW QUALITY PROTEIN: uncharacterized protein LOC112324528 [KO:K03841] [EC:3.1.3.11]
7453964  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
7463443  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
18105204  transketolase, chloroplastic [KO:K00615] [EC:2.2.1.1]
7458089  sedoheptulose-1,7-bisphosphatase, chloroplastic [KO:K01100] [EC:3.1.3.37]
112328513  sedoheptulose-1,7-bisphosphatase, chloroplastic [KO:K01100] [EC:3.1.3.37]
7472990  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
7482872  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
7475541  probable ribose-5-phosphate isomerase 2 [KO:K01807] [EC:5.3.1.6]
7484701  probable ribose-5-phosphate isomerase 4, chloroplastic isoform X1 [KO:K01807] [EC:5.3.1.6]
18099818  uncharacterized protein LOC18099818 [KO:K01807] [EC:5.3.1.6]
7487664  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
18098956  probable ribose-5-phosphate isomerase 3, chloroplastic [KO:K01807] [EC:5.3.1.6]
7496081  probable ribose-5-phosphate isomerase 3, chloroplastic isoform X1 [KO:K01807] [EC:5.3.1.6]
7465461  phosphoribulokinase, chloroplastic [KO:K00855] [EC:2.7.1.19]
18094096  phosphoribulokinase, chloroplastic [KO:K00855] [EC:2.7.1.19]
7458145  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
7494267  triosephosphate isomerase, chloroplastic [KO:K01803] [EC:5.3.1.1]
7465110  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
7453631  triosephosphate isomerase, chloroplastic [KO:K01803] [EC:5.3.1.1]
7487962  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
7488116  triosephosphate isomerase, cytosolic [KO:K01803] [EC:5.3.1.1]
18105789  ribulose-5-phosphate-3-epimerase, chloroplastic [KO:K01783] [EC:5.1.3.1]
112327520  ribulose-phosphate 3-epimerase, cytoplasmic isoform isoform X2 [KO:K01783] [EC:5.1.3.1]
7482826  uncharacterized protein LOC7482826 [KO:K00616] [EC:2.2.1.2]
7496524  uncharacterized protein LOC7496524 [KO:K00616] [EC:2.2.1.2]
18093986  uncharacterized protein LOC18093986 [KO:K00616] [EC:2.2.1.2]
7489379  phosphoenolpyruvate carboxylase 4 isoform X2 [KO:K01595] [EC:4.1.1.31]
7472353  phosphoenolpyruvate carboxylase [KO:K01595] [EC:4.1.1.31]
18095497  phosphoenolpyruvate carboxylase, housekeeping isozyme [KO:K01595] [EC:4.1.1.31]
7458241  phosphoenolpyruvate carboxylase 2 isoform X1 [KO:K01595] [EC:4.1.1.31]
7485946  phosphoenolpyruvate carboxylase 4 [KO:K01595] [EC:4.1.1.31]
7458772  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
7471542  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
7471541  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
7467210  phosphoenolpyruvate carboxykinase (ATP) isoform X2 [KO:K01610] [EC:4.1.1.49]
7480188  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
18094672  alanine aminotransferase 1, mitochondrial [KO:K00814] [EC:2.6.1.2]
7461955  alanine aminotransferase 2 [KO:K00814] [EC:2.6.1.2]
7469050  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
7460760  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
7497997  pyruvate, phosphate dikinase, chloroplastic [KO:K01006] [EC:2.7.9.1]
7470579  NADP-dependent malic enzyme [KO:K00029] [EC:1.1.1.40]
7470734  NADP-dependent malic enzyme isoform X2 [KO:K00029] [EC:1.1.1.40]
7476690  NADP-dependent malic enzyme [KO:K00029] [EC:1.1.1.40]
7461559  NADP-dependent malic enzyme [KO:K00029] [EC:1.1.1.40]
7461931  NADP-dependent malic enzyme isoform X1 [KO:K00029] [EC:1.1.1.40]
7479845  malate dehydrogenase [NADP], chloroplastic [KO:K00051] [EC:1.1.1.82]
7466303  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
7468079  aspartate aminotransferase, mitochondrial isoform X1 [KO:K14455] [EC:2.6.1.1]
7453937  malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
7467536  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
7453939  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
18102471  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
7456259  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
7469671  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
7471892  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
7478683  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
7465546  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18107367  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18107368  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
7484617  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18097666  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
112326012  malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
7483786  NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [KO:K00028] [EC:1.1.1.39]
7494056  NAD-dependent malic enzyme 59 kDa isoform, mitochondrial [KO:K00028] [EC:1.1.1.39]
7496944  NAD-dependent malic enzyme 59 kDa isoform, mitochondrial [KO:K00028] [EC:1.1.1.39]
18105029  NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [KO:K00028] [EC:1.1.1.39]
Compound
C00001  H2O
C00011  CO2
C00022  Pyruvate
C00036  Oxaloacetate
C00041  L-Alanine
C00049  L-Aspartate
C00074  Phosphoenolpyruvate
C00085  D-Fructose 6-phosphate
C00111  Glycerone phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00149  (S)-Malate
C00197  3-Phospho-D-glycerate
C00199  D-Ribulose 5-phosphate
C00231  D-Xylulose 5-phosphate
C00236  3-Phospho-D-glyceroyl phosphate
C00279  D-Erythrose 4-phosphate
C00354  D-Fructose 1,6-bisphosphate
C00447  Sedoheptulose 1,7-bisphosphate
C01182  D-Ribulose 1,5-bisphosphate
C05382  Sedoheptulose 7-phosphate
Related
pathway
pop00010  Glycolysis / Gluconeogenesis
pop00400  Phenylalanine, tyrosine and tryptophan biosynthesis
pop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00710   
LinkDB

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