KEGG   PATHWAY: pper00270
Entry
pper00270                   Pathway                                
Name
Cysteine and methionine metabolism - Prunus persica (peach)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
pper00270  Cysteine and methionine metabolism
pper00270

Module
pper_M00021  Cysteine biosynthesis, serine => cysteine [PATH:pper00270]
pper_M00034  Methionine salvage pathway [PATH:pper00270]
pper_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:pper00270]
Other DBs
GO: 0006534 0006555
Organism
Prunus persica (peach) [GN:pper]
Gene
18779168  serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
18771390  serine acetyltransferase 2 [KO:K00640] [EC:2.3.1.30]
18770200  serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
18779098  serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
18772639  cysteine synthase [KO:K01738] [EC:2.5.1.47]
18779047  cysteine synthase 2 [KO:K01738] [EC:2.5.1.47]
18774068  cysteine synthase isoform X1 [KO:K01738] [EC:2.5.1.47]
18791698  cysteine synthase [KO:K01738] [EC:2.5.1.47]
18793879  cysteine synthase [KO:K01738] [EC:2.5.1.47]
18786519  L-3-cyanoalanine synthase 1, mitochondrial [KO:K13034] [EC:2.5.1.47 4.4.1.9]
18769310  cystathionine beta-lyase, chloroplastic [KO:K01760] [EC:4.4.1.13]
18767574  homocysteine S-methyltransferase 2 [KO:K00547] [EC:2.1.1.10]
18791688  homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
18789427  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
18772986  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
18770067  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
18775020  S-adenosylmethionine synthase 2 [KO:K00789] [EC:2.5.1.6]
18771041  S-adenosylmethionine synthase 3 [KO:K00789] [EC:2.5.1.6]
18785694  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
18788092  LOW QUALITY PROTEIN: S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
18791900  S-adenosylmethionine synthase 5 [KO:K00789] [EC:2.5.1.6]
18782286  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
18788515  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
18788942  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
18785691  spermine synthase [KO:K00797] [EC:2.5.1.16]
18788330  spermidine synthase [KO:K00797] [EC:2.5.1.16]
18776857  spermidine synthase 2 isoform X1 [KO:K00797] [EC:2.5.1.16]
18772486  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
18790379  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
18767338  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 [KO:K01244] [EC:3.2.2.16]
18767211  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 [KO:K01244] [EC:3.2.2.16]
18771824  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
18768945  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
18769107  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
18778522  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 isoform X4 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
18792274  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
18789056  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 isoform X2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
18793089  uncharacterized protein LOC18793089 [KO:K23977] [EC:2.6.1.117]
18766018  probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
18780545  probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
18765981  probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
18781994  uncharacterized protein LOC18781994 [KO:K00837] [EC:2.6.1.-]
18776049  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
18777830  DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [KO:K00558] [EC:2.1.1.37]
18771792  DNA (cytosine-5)-methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
18773528  DNA (cytosine-5)-methyltransferase CMT3 [KO:K00558] [EC:2.1.1.37]
18775569  uncharacterized protein LOC18775569 [KO:K17398] [EC:2.1.1.37]
18793654  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
18775762  1-aminocyclopropane-1-carboxylate synthase [KO:K20772] [EC:4.4.1.14]
18787058  1-aminocyclopropane-1-carboxylate synthase 1 [KO:K20772] [EC:4.4.1.14]
18769052  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
18775476  1-aminocyclopropane-1-carboxylate synthase [KO:K01762] [EC:4.4.1.14]
18769044  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
18791560  1-aminocyclopropane-1-carboxylate synthase 8 [KO:K01762] [EC:4.4.1.14]
18781368  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
18784056  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
18782609  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
18770210  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
18791775  LOW QUALITY PROTEIN: 1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
18782864  aspartokinase 2, chloroplastic isoform X1 [KO:K00928] [EC:2.7.2.4]
18792572  aspartokinase 2, chloroplastic [KO:K00928] [EC:2.7.2.4]
18767698  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic isoform X1 [KO:K12524] [EC:2.7.2.4 1.1.1.3]
18777206  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic isoform X1 [KO:K12524] [EC:2.7.2.4 1.1.1.3]
18790198  uncharacterized protein LOC18790198 [KO:K00133] [EC:1.2.1.11]
18766258  homoserine kinase [KO:K00872] [EC:2.7.1.39]
18782333  cystathionine gamma-synthase 1, chloroplastic [KO:K27857] [EC:2.5.1.160]
18767948  branched-chain-amino-acid aminotransferase 2, chloroplastic isoform X3 [KO:K00826] [EC:2.6.1.42]
18766367  putative branched-chain-amino-acid aminotransferase 7 [KO:K00826] [EC:2.6.1.42]
18773202  branched-chain-amino-acid aminotransferase 3, chloroplastic [KO:K00826] [EC:2.6.1.42]
18789451  branched-chain-amino-acid aminotransferase 5, chloroplastic [KO:K00826] [EC:2.6.1.42]
18790912  branched-chain-amino-acid aminotransferase 2, chloroplastic isoform X1 [KO:K00826] [EC:2.6.1.42]
18774709  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
18774891  alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
18792092  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
18777994  glutamate--cysteine ligase, chloroplastic [KO:K01919] [EC:6.3.2.2]
18777525  glutamate--cysteine ligase, chloroplastic [KO:K01919] [EC:6.3.2.2]
18772608  glutathione synthetase, chloroplastic [KO:K21456] [EC:6.3.2.3]
18789734  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
18792440  aspartate aminotransferase, cytoplasmic isoform X1 [KO:K14454] [EC:2.6.1.1]
18783045  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
18791014  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
18780967  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
18776406  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
18792896  L-lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
18775910  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [KO:K05396] [EC:4.4.1.15]
18793009  D-cysteine desulfhydrase 2, mitochondrial [KO:K05396] [EC:4.4.1.15]
18772177  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
18774576  probable L-cysteine desulfhydrase, chloroplastic isoform X1 [KO:K22207] [EC:4.4.1.28]
18771931  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
18774311  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
18775399  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
18779761  malate dehydrogenase, cytoplasmic isoform X2 [KO:K00025] [EC:1.1.1.37]
18788358  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
18768488  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18780643  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18777783  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18773149  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18780671  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18770996  probable S-sulfocysteine synthase, chloroplastic [KO:K22846] [EC:2.5.1.144]
18766210  D-3-phosphoglycerate dehydrogenase 1, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
18782923  D-3-phosphoglycerate dehydrogenase 2, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
18770835  phosphoserine aminotransferase 1, chloroplastic [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
pper00010  Glycolysis / Gluconeogenesis
pper00250  Alanine, aspartate and glutamate metabolism
pper00260  Glycine, serine and threonine metabolism
pper00290  Valine, leucine and isoleucine biosynthesis
pper00430  Taurine and hypotaurine metabolism
pper00480  Glutathione metabolism
pper00620  Pyruvate metabolism
pper00640  Propanoate metabolism
pper00770  Pantothenate and CoA biosynthesis
pper00900  Terpenoid backbone biosynthesis
pper00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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