KEGG   PATHWAY: sgh00270
Entry
sgh00270                    Pathway                                
Name
Cysteine and methionine metabolism - Sinocyclocheilus grahami (golden-line barbel)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
sgh00270  Cysteine and methionine metabolism
sgh00270

Module
sgh_M00034  Methionine salvage pathway [PATH:sgh00270]
sgh_M00035  Methionine degradation [PATH:sgh00270]
sgh_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:sgh00270]
Other DBs
GO: 0006534 0006555
Organism
Sinocyclocheilus grahami (golden-line barbel) [GN:sgh]
Gene
107582733  cystathionine gamma-lyase-like [KO:K01758] [EC:4.4.1.1]
107585162  cystathionine gamma-lyase-like isoform X1 [KO:K01758] [EC:4.4.1.1]
107585163  cystathionine gamma-lyase-like [KO:K01758] [EC:4.4.1.1]
107596979  kynurenine--oxoglutarate transaminase 1-like [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
107587404  kynurenine--oxoglutarate transaminase 1-like isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
107593160  ccbl2; kynurenine--oxoglutarate transaminase 3 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
107588845  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
107557921  cystathionine beta-synthase-like isoform X1 [KO:K01697] [EC:4.2.1.22]
107574103  betaine--homocysteine S-methyltransferase 1-like isoform X1 [KO:K00544] [EC:2.1.1.5]
107590642  homocysteine S-methyltransferase YbgG-like [KO:K00547] [EC:2.1.1.10]
107548664  homocysteine S-methyltransferase YbgG-like isoform X1 [KO:K00547] [EC:2.1.1.10]
107570784  mtr; methionine synthase [KO:K00548] [EC:2.1.1.13]
107548521  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
107570697  methionine adenosyltransferase 2 subunit beta-like isoform X1 [KO:K00789] [EC:2.5.1.6]
107556049  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
107582520  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
107573852  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
107590055  methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
107562541  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
107569395  S-adenosylmethionine synthase-like isoform X1 [KO:K00789] [EC:2.5.1.6]
107570529  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
107554156  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
107570518  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
107570652  spermidine synthase-like isoform X1 [KO:K00797] [EC:2.5.1.16]
107586563  spermidine synthase-like [KO:K00797] [EC:2.5.1.16]
107548201  spermine synthase-like isoform X1 [KO:K00802] [EC:2.5.1.22]
107567162  spermine synthase-like [KO:K00802] [EC:2.5.1.22]
107598256  S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
107595051  S-methyl-5'-thioadenosine phosphorylase-like [KO:K00772] [EC:2.4.2.28]
107561313  laccase domain-containing protein 1-like isoform X1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
107551973  laccase domain-containing protein 1-like [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
107594353  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
107598470  methylthioribose-1-phosphate isomerase-like [KO:K08963] [EC:5.3.1.23]
107596491  methylthioribulose-1-phosphate dehydratase-like [KO:K08964] [EC:4.2.1.109]
107600482  apip; methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
107558259  enoph1; enolase-phosphatase E1 isoform X1 [KO:K09880] [EC:3.1.3.77]
107573845  enolase-phosphatase E1-like [KO:K09880] [EC:3.1.3.77]
107570259  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
107587016  tyrosine aminotransferase-like [KO:K00815] [EC:2.6.1.5]
107559814  tyrosine aminotransferase-like [KO:K00815] [EC:2.6.1.5]
107586302  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
107601700  L-amino-acid oxidase-like isoform X1 [KO:K03334] [EC:1.4.3.2]
107566124  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
107553737  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
107587934  DNA (cytosine-5)-methyltransferase 1-like [KO:K00558] [EC:2.1.1.37]
107596844  DNA (cytosine-5)-methyltransferase 1-like [KO:K00558] [EC:2.1.1.37]
107550405  DNA (cytosine-5)-methyltransferase 3A-like [KO:K17398] [EC:2.1.1.37]
107600869  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
107594697  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
107593266  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
107563667  DNA (cytosine-5)-methyltransferase 3B-like [KO:K17399] [EC:2.1.1.37]
107603157  DNA (cytosine-5)-methyltransferase 3B-like isoform X1 [KO:K17399] [EC:2.1.1.37]
107559473  uncharacterized protein LOC107559473 isoform X1 [KO:K17399] [EC:2.1.1.37]
107549566  uncharacterized protein LOC107549566 isoform X1 [KO:K17399] [EC:2.1.1.37]
107603113  uncharacterized protein LOC107603113 [KO:K17399] [EC:2.1.1.37]
107549981  DNA (cytosine-5)-methyltransferase 3A-like [KO:K17399] [EC:2.1.1.37]
107596784  adenosylhomocysteinase B-like isoform X1 [KO:K01251] [EC:3.13.2.1]
107583963  putative adenosylhomocysteinase 3 [KO:K01251] [EC:3.13.2.1]
107550485  ahcyl1; adenosylhomocysteinase 2 isoform X1 [KO:K01251] [EC:3.13.2.1]
107554940  putative adenosylhomocysteinase 3 [KO:K01251] [EC:3.13.2.1]
107579442  putative adenosylhomocysteinase 3 [KO:K01251] [EC:3.13.2.1]
107591817  adenosylhomocysteinase 2 isoform X1 [KO:K01251] [EC:3.13.2.1]
107554187  adenosylhomocysteinase B [KO:K01251] [EC:3.13.2.1]
107573985  adenosylhomocysteinase 2-like isoform X1 [KO:K01251] [EC:3.13.2.1]
107551165  branched-chain-amino-acid aminotransferase, cytosolic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
107587341  branched-chain-amino-acid aminotransferase, cytosolic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
107590116  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
107561362  branched-chain-amino-acid aminotransferase, cytosolic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
107600890  alanine--glyoxylate aminotransferase 2, mitochondrial-like [KO:K00827] [EC:2.6.1.44 2.6.1.40]
107597697  glutamate--cysteine ligase catalytic subunit-like [KO:K11204] [EC:6.3.2.2]
107570553  gclc; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
107599012  glutamate--cysteine ligase regulatory subunit-like [KO:K11205]
107603255  glutamate--cysteine ligase regulatory subunit-like [KO:K11205]
107601332  gss; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
107594436  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
107572968  cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
107573765  cysteine dioxygenase type 1-like [KO:K00456] [EC:1.13.11.20]
107569578  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
107586067  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
107601049  aspartate aminotransferase, cytoplasmic-like isoform X1 [KO:K14454] [EC:2.6.1.1]
107596935  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
107583854  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
107557508  aspartate aminotransferase, mitochondrial-like [KO:K14455] [EC:2.6.1.1]
107596461  aspartate aminotransferase, mitochondrial-like isoform X1 [KO:K14455] [EC:2.6.1.1]
107583319  mpst; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
107562837  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
107558315  L-lactate dehydrogenase A chain-like [KO:K00016] [EC:1.1.1.27]
107589975  L-lactate dehydrogenase B-A chain-like [KO:K00016] [EC:1.1.1.27]
107586539  L-lactate dehydrogenase B-A chain [KO:K00016] [EC:1.1.1.27]
107551416  L-lactate dehydrogenase B-B chain [KO:K00016] [EC:1.1.1.27]
107594420  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107583563  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107577772  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107583187  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
107577591  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107588934  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
107564965  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
107583668  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
107564133  D-3-phosphoglycerate dehydrogenase-like [KO:K00058] [EC:1.1.1.95 1.1.1.399]
107548526  phosphoserine aminotransferase-like [KO:K00831] [EC:2.6.1.52]
107556046  phosphoserine aminotransferase-like isoform X1 [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
sgh00010  Glycolysis / Gluconeogenesis
sgh00250  Alanine, aspartate and glutamate metabolism
sgh00260  Glycine, serine and threonine metabolism
sgh00290  Valine, leucine and isoleucine biosynthesis
sgh00430  Taurine and hypotaurine metabolism
sgh00480  Glutathione metabolism
sgh00620  Pyruvate metabolism
sgh00640  Propanoate metabolism
sgh00770  Pantothenate and CoA biosynthesis
sgh00900  Terpenoid backbone biosynthesis
sgh00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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