KEGG   PATHWAY: sita00270
Entry
sita00270                   Pathway                                
Name
Cysteine and methionine metabolism - Setaria italica (foxtail millet)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
sita00270  Cysteine and methionine metabolism
sita00270

Module
sita_M00021  Cysteine biosynthesis, serine => cysteine [PATH:sita00270]
sita_M00034  Methionine salvage pathway [PATH:sita00270]
sita_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:sita00270]
Other DBs
GO: 0006534 0006555
Organism
Setaria italica (foxtail millet) [GN:sita]
Gene
101781850  probable serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
101774345  probable serine acetyltransferase 1 [KO:K00640] [EC:2.3.1.30]
101762447  probable serine acetyltransferase 4 [KO:K00640] [EC:2.3.1.30]
101768268  probable serine acetyltransferase 2 [KO:K00640] [EC:2.3.1.30]
101767749  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101756742  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101786348  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101785643  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101753657  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101754469  cysteine synthase isoform X1 [KO:K01738] [EC:2.5.1.47]
101769344  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101761570  cysteine synthase [KO:K01738] [EC:2.5.1.47]
101786048  cysteine synthase, chloroplastic/chromoplastic isoform X2 [KO:K01738] [EC:2.5.1.47]
101779131  bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial [KO:K13034] [EC:2.5.1.47 4.4.1.9]
101767849  cystathionine beta-lyase, chloroplastic [KO:K01760] [EC:4.4.1.13]
101774971  homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
101761102  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
101772515  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 1 [KO:K00549] [EC:2.1.1.14]
101760389  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 1 [KO:K00549] [EC:2.1.1.14]
101778008  S-adenosylmethionine synthase 3 [KO:K00789] [EC:2.5.1.6]
101764969  S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
101756508  S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
101776933  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
101780386  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
101774539  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
101766709  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
101771514  spermine synthase [KO:K00797] [EC:2.5.1.16]
101761225  spermine synthase isoform X2 [KO:K00797] [EC:2.5.1.16]
101781268  spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
101774809  nicotianamine synthase 3 [KO:K05953] [EC:2.5.1.43]
101786975  nicotianamine synthase 2 [KO:K05953] [EC:2.5.1.43]
101770261  LOW QUALITY PROTEIN: nicotianamine synthase 2-like [KO:K05953] [EC:2.5.1.43]
101781591  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 [KO:K01244] [EC:3.2.2.16]
101762402  methylthioribose kinase 1 [KO:K00899] [EC:2.7.1.100]
101756579  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
101776717  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 isoform X1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
101758523  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase homolog 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
101774587  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
101756549  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
101761216  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
101752642  uncharacterized protein LOC101752642 [KO:K23977] [EC:2.6.1.117]
101770190  nicotianamine aminotransferase A [KO:K00815] [EC:2.6.1.5]
101771219  nicotianamine aminotransferase A [KO:K00815] [EC:2.6.1.5]
101758101  nicotianamine aminotransferase B [KO:K00815] [EC:2.6.1.5]
101782097  probable aminotransferase TAT2 isoform X1 [KO:K00815] [EC:2.6.1.5]
101785339  nicotianamine aminotransferase A [KO:K00815] [EC:2.6.1.5]
101755781  nicotianamine aminotransferase A isoform X1 [KO:K00815] [EC:2.6.1.5]
101769783  nicotianamine aminotransferase A isoform X1 [KO:K00815] [EC:2.6.1.5]
101754095  aromatic aminotransferase ISS1 [KO:K00837] [EC:2.6.1.-]
101759989  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
101778313  DNA (cytosine-5)-methyltransferase 1B [KO:K00558] [EC:2.1.1.37]
101755233  DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [KO:K00558] [EC:2.1.1.37]
101774591  DNA (cytosine-5)-methyltransferase 3 [KO:K00558] [EC:2.1.1.37]
101776623  DNA (cytosine-5)-methyltransferase CMT1-like [KO:K00558] [EC:2.1.1.37]
101757301  DNA (cytosine-5)-methyltransferase 1A [KO:K00558] [EC:2.1.1.37]
101781565  actin cytoskeleton-regulatory complex protein PAN1 isoform X1 [KO:K17398] [EC:2.1.1.37]
101776126  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
101786236  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
101756021  1-aminocyclopropane-1-carboxylate synthase [KO:K20772] [EC:4.4.1.14]
101758233  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
101759620  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
101753646  1-aminocyclopropane-1-carboxylate synthase 1 [KO:K01762] [EC:4.4.1.14]
101756803  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
101780742  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
101781542  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
101766368  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
101780769  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
101781172  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
101766113  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
101766733  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
101759358  aspartokinase 1, chloroplastic [KO:K00928] [EC:2.7.2.4]
101774791  aspartokinase 2, chloroplastic [KO:K00928] [EC:2.7.2.4]
101783207  aspartokinase 1, chloroplastic [KO:K00928] [EC:2.7.2.4]
101783167  bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic isoform X1 [KO:K12524] [EC:2.7.2.4 1.1.1.3]
101753157  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [KO:K12524] [EC:2.7.2.4 1.1.1.3]
101763234  uncharacterized protein LOC101763234 [KO:K00133] [EC:1.2.1.11]
101766320  uncharacterized protein LOC101766320 [KO:K00003] [EC:1.1.1.3]
101758733  uncharacterized protein LOC101758733 [KO:K00003] [EC:1.1.1.3]
101761148  LOW QUALITY PROTEIN: homoserine kinase [KO:K00872] [EC:2.7.1.39]
101776607  cystathionine gamma-synthase 1, chloroplastic [KO:K27857] [EC:2.5.1.160]
101759864  cystathionine gamma-synthase 1, chloroplastic [KO:K27857] [EC:2.5.1.160]
101760683  cystathionine gamma-synthase 1, chloroplastic [KO:K27857] [EC:2.5.1.160]
101783509  branched-chain amino acid aminotransferase 2, chloroplastic [KO:K00826] [EC:2.6.1.42]
101776890  branched-chain-amino-acid aminotransferase 2, chloroplastic [KO:K00826] [EC:2.6.1.42]
101762712  branched-chain-amino-acid aminotransferase 5, chloroplastic isoform X2 [KO:K00826] [EC:2.6.1.42]
101764742  branched-chain-amino-acid aminotransferase 5, chloroplastic isoform X1 [KO:K00826] [EC:2.6.1.42]
101784788  branched-chain-amino-acid aminotransferase 5, chloroplastic [KO:K00826] [EC:2.6.1.42]
101780905  alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
101784978  alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
101763794  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
101765990  glutamate--cysteine ligase B, chloroplastic [KO:K01919] [EC:6.3.2.2]
101753211  glutamate--cysteine ligase A, chloroplastic [KO:K01919] [EC:6.3.2.2]
101778090  glutathione synthetase, chloroplastic [KO:K21456] [EC:6.3.2.3]
101780781  glutathione synthetase, chloroplastic isoform X1 [KO:K21456] [EC:6.3.2.3]
101771115  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
101760319  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
101784980  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
101754781  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
101768696  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial [KO:K01011] [EC:2.8.1.1 2.8.1.2]
101777557  thiosulfate/3-mercaptopyruvate sulfurtransferase 2 isoform X2 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
101768692  L-lactate dehydrogenase [KO:K00016] [EC:1.1.1.27]
101769096  L-lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
101763021  putative D-cysteine desulfhydrase 1, mitochondrial [KO:K05396] [EC:4.4.1.15]
101785809  putative D-cysteine desulfhydrase 2, mitochondrial [KO:K05396] [EC:4.4.1.15]
101784048  putative L-cysteine desulfhydrase 1 [KO:K22207] [EC:4.4.1.28]
101784864  putative L-cysteine desulfhydrase 1 [KO:K22207] [EC:4.4.1.28]
101760275  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
101765343  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
101779301  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101760979  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
101772404  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
101771167  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
101761852  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
101771269  malate dehydrogenase, chloroplastic isoform X2 [KO:K00026] [EC:1.1.1.37]
101775144  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
101787009  cysteine synthase [KO:K22846] [EC:2.5.1.144]
101763922  D-3-phosphoglycerate dehydrogenase 3, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
101762755  D-3-phosphoglycerate dehydrogenase 3, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
101779007  D-3-phosphoglycerate dehydrogenase 3, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
101769748  LOW QUALITY PROTEIN: phosphoserine aminotransferase 1, chloroplastic-like [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
sita00010  Glycolysis / Gluconeogenesis
sita00250  Alanine, aspartate and glutamate metabolism
sita00260  Glycine, serine and threonine metabolism
sita00290  Valine, leucine and isoleucine biosynthesis
sita00430  Taurine and hypotaurine metabolism
sita00480  Glutathione metabolism
sita00620  Pyruvate metabolism
sita00640  Propanoate metabolism
sita00770  Pantothenate and CoA biosynthesis
sita00900  Terpenoid backbone biosynthesis
sita00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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