KEGG   PATHWAY: sjo00240
Entry
sjo00240                    Pathway                                
Name
Pyrimidine metabolism - Scomber japonicus (chub mackerel)
Class
Metabolism; Nucleotide metabolism
Pathway map
sjo00240  Pyrimidine metabolism
sjo00240

Module
sjo_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:sjo00240]
sjo_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:sjo00240]
sjo_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:sjo00240]
sjo_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:sjo00240]
sjo_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:sjo00240]
Other DBs
GO: 0006220 0006213
Organism
Scomber japonicus (chub mackerel) [GN:sjo]
Gene
128377168  cad; CAD protein [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
128356678  dhodh; dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
128367844  umps; uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
128368791  cmpk; UMP-CMP kinase [KO:K13800] [EC:2.7.4.14]
128375505  cmpk2; UMP-CMP kinase 2, mitochondrial [KO:K13809] [EC:2.7.4.14]
128381932  nucleoside diphosphate kinase A2-like [KO:K00940] [EC:2.7.4.6]
128378742  nme4; nucleoside diphosphate kinase, mitochondrial [KO:K00940] [EC:2.7.4.6]
128362187  nme7; nucleoside diphosphate kinase 7 [KO:K00940] [EC:2.7.4.6]
128379093  nme3; nucleoside diphosphate kinase 3 isoform X1 [KO:K00940] [EC:2.7.4.6]
128379386  nucleoside diphosphate kinase B-like [KO:K00940] [EC:2.7.4.6]
128376836  ak9; adenylate kinase 9 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
128380921  entpd1; ectonucleoside triphosphate diphosphohydrolase 1 isoform X1 [KO:K01510] [EC:3.6.1.5]
128366463  entpd3; ectonucleoside triphosphate diphosphohydrolase 3 [KO:K01510] [EC:3.6.1.5]
128375509  cant1b; soluble calcium-activated nucleotidase 1b isoform X1 [KO:K12304] [EC:3.6.1.6]
128379085  cant1a; soluble calcium-activated nucleotidase 1 isoform X1 [KO:K12304] [EC:3.6.1.6]
128364563  entpd4; ectonucleoside triphosphate diphosphohydrolase 4 isoform X1 [KO:K12305] [EC:3.6.1.6]
128375368  entpd5a; ectonucleoside triphosphate diphosphohydrolase 5 [KO:K01511] [EC:3.6.1.6]
128377050  ectonucleoside triphosphate diphosphohydrolase 5-like [KO:K01511] [EC:3.6.1.6]
128373348  entpd6; ectonucleoside triphosphate diphosphohydrolase 6 [KO:K01511] [EC:3.6.1.6]
128374592  LOW QUALITY PROTEIN: venom phosphodiesterase 2 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
128377220  enpp1; ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
128367740  asmtl; probable bifunctional dTTP/UTP pyrophosphatase/methyltransferase protein isoform X1 [KO:K25435] [EC:3.6.1.- 2.1.1.-]
128356284  nudt2; bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] [KO:K01518] [EC:3.6.1.17]
128374736  ctps1a; CTP synthase 1 [KO:K01937] [EC:6.3.4.2]
128367131  ctps1b; CTP synthase 1b [KO:K01937] [EC:6.3.4.2]
128357984  uckl1b; uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
128369094  uck2b; uridine-cytidine kinase 2-B [KO:K00876] [EC:2.7.1.48]
128380532  uck1; uridine-cytidine kinase 1 [KO:K00876] [EC:2.7.1.48]
128377190  uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
128361754  uck2a; uridine-cytidine kinase 2-A [KO:K00876] [EC:2.7.1.48]
128357388  uckl1a; uridine-cytidine kinase-like 1a [KO:K00876] [EC:2.7.1.48]
128374227  nt5c1aa; 5'-nucleotidase, cytosolic IAa isoform X1 [KO:K01081] [EC:3.1.3.5]
128380214  nt5c2l1; 5'-nucleotidase, cytosolic II, like 1 [KO:K01081] [EC:3.1.3.5]
128359171  cytosolic 5'-nucleotidase 1B [KO:K01081] [EC:3.1.3.5]
128375398  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
128375497  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
128381460  nt5c2b; cytosolic purine 5'-nucleotidase isoform X1 [KO:K01081] [EC:3.1.3.5]
128381754  5'(3')-deoxyribonucleotidase, mitochondrial-like [KO:K01081] [EC:3.1.3.5]
128377080  cytosolic 5'-nucleotidase 1A-like [KO:K01081] [EC:3.1.3.5]
128372765  nt5c2a; 5'-nucleotidase, cytosolic IIa [KO:K01081] [EC:3.1.3.5]
128377276  nt5e; 5'-nucleotidase [KO:K19970] [EC:3.1.3.5]
128366020  upp1; uridine phosphorylase 1 [KO:K00757] [EC:2.4.2.3]
128367726  upp2; uridine phosphorylase 2 [KO:K00757] [EC:2.4.2.3]
128358438  uncharacterized protein zgc:136858 isoform X1 [KO:K16330] [EC:4.2.1.70 2.7.1.83]
128380876  7-methylguanosine phosphate-specific 5'-nucleotidase-like isoform X1 [KO:K24242] [EC:3.1.3.91]
128365741  nt5c3a; cytosolic 5'-nucleotidase 3 isoform X1 [KO:K24242] [EC:3.1.3.91]
128378460  cytosolic 5'-nucleotidase 3-like [KO:K24242] [EC:3.1.3.91]
128355216  cytidine deaminase-like [KO:K01489] [EC:3.5.4.5]
128383819  zgc:103586 [KO:K01489] [EC:3.5.4.5]
128371111  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
128360682  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
128374659  rrm2b; ribonucleoside-diphosphate reductase subunit M2 B [KO:K10808] [EC:1.17.4.1]
128377024  ribonucleoside-diphosphate reductase subunit M2 [KO:K10808] [EC:1.17.4.1]
128377025  ribonucleoside-diphosphate reductase subunit M2-like [KO:K10808] [EC:1.17.4.1]
128374360  dctpp1; glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial [KO:K16904] [EC:3.6.1.12]
128377564  hddc2; HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
128380314  dck; deoxycytidine kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
128371848  deoxycytidine kinase 2-like [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
128375430  deoxycytidylate deaminase-like [KO:K01493] [EC:3.5.4.12]
128373081  dctd; deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
128361656  dtymk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
128362512  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial [KO:K01520] [EC:3.6.1.23]
128385142  tymp; thymidine phosphorylase isoform X1 [KO:K00758] [EC:2.4.2.4]
128375597  tk1; thymidine kinase, cytosolic [KO:K00857] [EC:2.7.1.21]
128373074  tk2; thymidine kinase 2, mitochondrial [KO:K00857] [EC:2.7.1.21]
128382137  tyms; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
128368849  dpydb; dihydropyrimidine dehydrogenase [NADP(+)] [KO:K00207] [EC:1.3.1.2]
128365902  dpys; dihydropyrimidinase [KO:K01464] [EC:3.5.2.2]
128364391  upb1; beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
sjo00030  Pentose phosphate pathway
sjo00220  Arginine biosynthesis
sjo00250  Alanine, aspartate and glutamate metabolism
sjo00280  Valine, leucine and isoleucine degradation
sjo00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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