KEGG   PATHWAY: ssc03250
Entry
ssc03250                    Pathway                                
Name
Viral life cycle - HIV-1 - Sus scrofa (pig)
Class
Genetic Information Processing; Information processing in viruses
Pathway map
ssc03250  Viral life cycle - HIV-1
ssc03250

Organism
Sus scrofa (pig) [GN:ssc]
Gene
414371  CCR5; C-C chemokine receptor type 5 [KO:K04180]
396659  CXCR4; C-X-C chemokine receptor type 4 [KO:K04189]
404704  CD4; T-cell surface glycoprotein CD4 precursor [KO:K06454]
100517999  MAP1S; microtubule-associated protein 1S [KO:K10429]
100519062  MAP1B; microtubule-associated protein 1B isoform X1 [KO:K10429]
100520470  MAP1A; microtubule-associated protein 1A isoform X1 [KO:K10429]
100526005  FEZ1; fasciculation and elongation protein zeta-1 isoform X1 [KO:K25663]
100511132  BICD1; protein bicaudal D homolog 1 isoform X3 [KO:K18739]
100512597  BICD2; protein bicaudal D homolog 2 isoform X1 [KO:K18739]
733579  tripartite motif protein TRIM5 [KO:K10648] [EC:2.3.2.27]
100037939  APOBEC3B; DNA dC->dU-editing enzyme APOBEC-3B [KO:K18750] [EC:3.5.4.-]
100154500  deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like [KO:K22544] [EC:3.1.5.-]
100157597  PSIP1; PC4 and SFRS1-interacting protein [KO:K25057]
100512827  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
100154735  SMARCB1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1 [KO:K11648]
397637  PPIA; peptidyl-prolyl cis-trans isomerase A [KO:K03767] [EC:5.2.1.8]
100152191  CPSF6; cleavage and polyadenylation specificity factor subunit 6 [KO:K14398]
100519008  CPSF7; cleavage and polyadenylation specificity factor subunit 7 isoform X1 [KO:K14398]
100515455  TNPO3; transportin-3 isoform X1 [KO:K15436]
397128  MX1; interferon-induced GTP-binding protein Mx1 [KO:K14754]
100511376  E3 SUMO-protein ligase RanBP2 isoform X3 [KO:K12172] [EC:2.3.2.-]
100153581  NUP153; nuclear pore complex protein Nup153 isoform X1 [KO:K14296]
100156226  EP300; LOW QUALITY PROTEIN: histone acetyltransferase p300 [KO:K04498] [EC:2.3.1.48]
100620215  CREBBP; CREB-binding protein [KO:K04498] [EC:2.3.1.48]
100524215  KAT2A; histone acetyltransferase KAT2A isoform X4 [KO:K06062] [EC:2.3.1.48]
100626923  KAT2B; LOW QUALITY PROTEIN: histone acetyltransferase KAT2B [KO:K06062] [EC:2.3.1.48]
100307051  CDK9; cyclin-dependent kinase 9 [KO:K02211] [EC:2.7.11.22 2.7.11.23]
100737376  CCNT1; LOW QUALITY PROTEIN: cyclin-T1 [KO:K15188]
100737861  CCNT2; cyclin-T2 isoform X1 [KO:K15188]
100524487  AFF4; AF4/FMR2 family member 4 isoform X2 [KO:K15185]
100156183  ELL3; RNA polymerase II elongation factor ELL3 [KO:K15183]
100523777  ELL2; RNA polymerase II elongation factor ELL2 [KO:K15183]
102162997  ELL; RNA polymerase II elongation factor ELL isoform X1 [KO:K15183]
100524063  MLLT3; protein AF-9 isoform X2 [KO:K15187]
100517879  MLLT1; protein ENL isoform X1 [KO:K15187]
100514855  NELFA; LOW QUALITY PROTEIN: negative elongation factor A [KO:K15179]
100514560  NELFB; negative elongation factor B [KO:K15180]
100134985  NELFCD; negative elongation factor D [KO:K15181]
100124384  NELFE; negative elongation factor E [KO:K15182]
100515097  SUPT4H1; transcription elongation factor SPT4 [KO:K15171]
100623068  SUPT5H; LOW QUALITY PROTEIN: transcription elongation factor SPT5 [KO:K15172]
397330  XPO1; exportin-1 isoform X3 [KO:K14290]
397655  RAN; GTP-binding nuclear protein Ran [KO:K07936]
100156882  FURIN; furin isoform X2 [KO:K01349] [EC:3.4.21.75]
100152356  SERINC3; serine incorporator 3 [KO:K25661]
100624743  SERINC5; serine incorporator 5 isoform X1 [KO:K25655]
100302088  BST2; bone marrow stromal antigen 2 [KO:K06731]
106508767  HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182]
100524238  TSG101; LOW QUALITY PROTEIN: tumor susceptibility gene 101 protein [KO:K12183]
100512857  CHMP6; charged multivesicular body protein 6 [KO:K12195]
100520257  CHMP4A; charged multivesicular body protein 4a isoform X2 [KO:K12194]
100516767  CHMP4B; charged multivesicular body protein 4b [KO:K12194]
100512811  PDCD6IP; programmed cell death 6-interacting protein isoform X1 [KO:K12200]
100627841  VPS4A; vacuolar protein sorting-associated protein 4A [KO:K12196]
100625338  VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196]
Reference
PMID:27357278
  Authors
Li G, De Clercq E
  Title
HIV Genome-Wide Protein Associations: a Review of 30 Years of Research.
  Journal
Microbiol Mol Biol Rev 80:679-731 (2016)
DOI:10.1128/MMBR.00065-15
Reference
PMID:21284899
  Authors
Tagliamonte M, Tornesello ML, Buonaguro FM, Buonaguro L
  Title
Conformational HIV-1 envelope on particulate structures: a tool for chemokine coreceptor binding studies.
  Journal
J Transl Med 9 Suppl 1:S1 (2011)
DOI:10.1186/1479-5876-9-S1-S1
Reference
PMID:31028522
  Authors
Novikova M, Zhang Y, Freed EO, Peng K
  Title
Multiple Roles of HIV-1 Capsid during the Virus Replication Cycle.
  Journal
Virol Sin 34:119-134 (2019)
DOI:10.1007/s12250-019-00095-3
Reference
PMID:30286189
  Authors
Rawle DJ, Harrich D
  Title
Toward the "unravelling" of HIV: Host cell factors involved in HIV-1 core uncoating.
  Journal
PLoS Pathog 14:e1007270 (2018)
DOI:10.1371/journal.ppat.1007270
Reference
PMID:25036886
  Authors
Le Sage V, Mouland AJ, Valiente-Echeverria F
  Title
Roles of HIV-1 capsid in viral replication and immune evasion.
  Journal
Virus Res 193:116-29 (2014)
DOI:10.1016/j.virusres.2014.07.010
Reference
PMID:32429351
  Authors
Murphy RE, Saad JS
  Title
The Interplay between HIV-1 Gag Binding to the Plasma Membrane and Env Incorporation.
  Journal
Viruses 12:E548 (2020)
DOI:10.3390/v12050548
Reference
PMID:21360054
  Authors
He N, Zhou Q
  Title
New insights into the control of HIV-1 transcription: when Tat meets the 7SK snRNP and super elongation complex (SEC).
  Journal
J Neuroimmune Pharmacol 6:260-8 (2011)
DOI:10.1007/s11481-011-9267-6
Reference
PMID:19865606
  Authors
Pincetic A, Leis J
  Title
The Mechanism of Budding of Retroviruses From Cell Membranes.
  Journal
Adv Virol 2009:6239691-6239699 (2009)
DOI:10.1155/2009/623969
Reference
PMID:32858867
  Authors
Kleinpeter AB, Freed EO
  Title
HIV-1 Maturation: Lessons Learned from Inhibitors.
  Journal
Viruses 12:E940 (2020)
DOI:10.3390/v12090940
Related
pathway
ssc03013  Nucleocytoplasmic transport
ssc04144  Endocytosis
KO pathway
ko03250   
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