KEGG   PATHWAY: tad03018
Entry
tad03018                    Pathway                                
Name
RNA degradation - Trichoplax adhaerens (placozoan)
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
tad03018  RNA degradation
tad03018

Other DBs
GO: 0006401
Organism
Trichoplax adhaerens (placozoan) [GN:tad]
Gene
TRIADDRAFT_18652  hypothetical protein [KO:K12584] [EC:3.6.1.59]
TRIADDRAFT_50612  hypothetical protein [KO:K07573]
TRIADDRAFT_21452  hypothetical protein [KO:K03679]
TRIADDRAFT_25085  hypothetical protein [KO:K12586]
TRIADDRAFT_61054  hypothetical protein [KO:K12587]
TRIADDRAFT_55798  hypothetical protein [KO:K12589]
TRIADDRAFT_51876  hypothetical protein [KO:K11600]
TRIADDRAFT_14906  hypothetical protein [KO:K03678]
TRIADDRAFT_25898  hypothetical protein [KO:K12585] [EC:3.1.13.-]
TRIADDRAFT_27020  hypothetical protein [KO:K12591] [EC:3.1.13.-]
TRIADDRAFT_57253  hypothetical protein [KO:K12592]
TRIADDRAFT_55666  hypothetical protein [KO:K12593]
TRIADDRAFT_23436  hypothetical protein [KO:K03514] [EC:2.7.7.19]
TRIADDRAFT_51887  hypothetical protein [KO:K12597]
TRIADDRAFT_21387  hypothetical protein [KO:K12599] [EC:5.6.2.6]
TRIADDRAFT_54351  hypothetical protein [KO:K12600]
TRIADDRAFT_52348  hypothetical protein [KO:K12602]
TRIADDRAFT_30062  hypothetical protein [KO:K12603] [EC:3.1.13.4]
TRIADDRAFT_23606  hypothetical protein [KO:K12604]
TRIADDRAFT_51117  hypothetical protein [KO:K12605]
TRIADDRAFT_21593  hypothetical protein [KO:K12580]
TRIADDRAFT_51852  hypothetical protein [KO:K10643] [EC:2.3.2.27]
TRIADDRAFT_26102  hypothetical protein [KO:K12581]
TRIADDRAFT_50081  hypothetical protein [KO:K12606]
TRIADDRAFT_52629  hypothetical protein [KO:K12607]
TRIADDRAFT_22905  hypothetical protein [KO:K14442] [EC:5.6.2.6]
TRIADDRAFT_54096  hypothetical protein [KO:K14442] [EC:5.6.2.6]
TRIADDRAFT_52927  hypothetical protein [KO:K01148] [EC:3.1.13.4]
TRIADDRAFT_17411  expressed hypothetical protein [KO:K14443]
TRIADDRAFT_27786  hypothetical protein [KO:K13126]
TRIADDRAFT_30968  hypothetical protein [KO:K12571] [EC:3.1.13.4]
TRIADDRAFT_24936  hypothetical protein [KO:K12572]
TRIADDRAFT_22739  hypothetical protein [KO:K12613] [EC:3.6.1.62]
TRIADDRAFT_51339  hypothetical protein [KO:K12614] [EC:5.6.2.7]
TRIADDRAFT_59925  hypothetical protein [KO:K12616]
TRIADDRAFT_54328  hypothetical protein [KO:K12617]
TRIADDRAFT_58702  hypothetical protein [KO:K12620]
TRIADDRAFT_53171  hypothetical protein [KO:K12621]
TRIADDRAFT_23866  hypothetical protein [KO:K12622]
TRIADDRAFT_36877  expressed hypothetical protein [KO:K12623]
TRIADDRAFT_50007  hypothetical protein [KO:K12624]
TRIADDRAFT_31943  hypothetical protein [KO:K12625]
TRIADDRAFT_55150  hypothetical protein [KO:K12626]
TRIADDRAFT_23559  hypothetical protein [KO:K12627]
TRIADDRAFT_37880  expressed hypothetical protein [KO:K01689] [EC:4.2.1.11]
TRIADDRAFT_18118  hypothetical protein [KO:K01689] [EC:4.2.1.11]
TRIADDRAFT_57060  hypothetical protein [KO:K00962] [EC:2.7.7.8]
TRIADDRAFT_28803  hypothetical protein [KO:K00850] [EC:2.7.1.11]
TRIADDRAFT_64372  hypothetical protein [KO:K04043]
TRIADDRAFT_54071  hypothetical protein [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
tad03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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