KEGG   PATHWAY: vri00230
Entry
vri00230                    Pathway                                
Name
Purine metabolism - Vitis riparia (riverbank grape)
Class
Metabolism; Nucleotide metabolism
Pathway map
vri00230  Purine metabolism
vri00230

Module
vri_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:vri00230]
vri_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:vri00230]
vri_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:vri00230]
vri_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:vri00230]
vri_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:vri00230]
Other DBs
GO: 0006163 0042278
Organism
Vitis riparia (riverbank grape) [GN:vri]
Gene
117904811  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
117908842  nudix hydrolase 10-like isoform X1 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
117927013  nudix hydrolase 2-like [KO:K26956] [EC:3.6.1.13 3.6.1.22]
117924028  nudix hydrolase 2 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
117919763  nudix hydrolase 23, chloroplastic isoform X1 [KO:K18453] [EC:3.6.1.13 3.6.1.18]
117906951  nudix hydrolase 14, chloroplastic [KO:K18447] [EC:3.6.1.21]
117933642  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
117915456  phosphoglucomutase, cytoplasmic [KO:K01835] [EC:5.4.2.2]
117907687  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
117932453  ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
117910890  amidophosphoribosyltransferase, chloroplastic-like [KO:K00764] [EC:2.4.2.14]
117926661  phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
117922898  phosphoribosylglycinamide formyltransferase, chloroplastic [KO:K00601] [EC:2.1.2.2]
117929267  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
117918906  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic-like [KO:K01933] [EC:6.3.3.1]
117930951  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic-like [KO:K01933] [EC:6.3.3.1]
117931118  phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [KO:K11808] [EC:4.1.1.21]
117907764  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [KO:K01923] [EC:6.3.2.6]
117928098  adenylosuccinate lyase-like [KO:K01756] [EC:4.3.2.2]
117912695  bifunctional purine biosynthesis protein PurH isoform X1 [KO:K00602] [EC:2.1.2.3 3.5.4.10]
117922769  adenine phosphoribosyltransferase 5-like [KO:K00759] [EC:2.4.2.7]
117912581  adenine phosphoribosyltransferase 5-like isoform X1 [KO:K00759] [EC:2.4.2.7]
117927008  adenine phosphoribosyltransferase 3-like isoform X1 [KO:K00759] [EC:2.4.2.7]
117907390  adenine phosphoribosyltransferase 1, chloroplastic [KO:K00759] [EC:2.4.2.7]
117922413  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
117924900  5'-nucleotidase SurE-like isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
117914765  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
117906090  hypoxanthine-guanine-xanthine phosphoribosyltransferase isoform X1 [KO:K00760] [EC:2.4.2.8]
117909266  inosine-5'-monophosphate dehydrogenase-like [KO:K00088] [EC:1.1.1.205]
117903978  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
117931186  nucleoside diphosphate kinase 3-like [KO:K00940] [EC:2.7.4.6]
117931569  nucleoside diphosphate kinase B [KO:K00940] [EC:2.7.4.6]
117916314  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
117916678  probable apyrase 6 isoform X1 [KO:K01510] [EC:3.6.1.5]
117914816  apyrase 2-like [KO:K14641] [EC:3.6.1.5]
117914271  inosine triphosphate pyrophosphatase [KO:K01519] [EC:3.6.1.66]
117915551  xanthine dehydrogenase 1-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
117925880  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
117932815  GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
117920793  guanylate kinase 2 [KO:K00942] [EC:2.7.4.8]
117913925  guanylate kinase 2, chloroplastic/mitochondrial [KO:K00942] [EC:2.7.4.8]
117918967  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
117913985  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
117929699  LOW QUALITY PROTEIN: ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
117924506  5'-deoxynucleotidase HDDC2-like isoform X1 [KO:K07023] [EC:3.1.3.89]
117925584  5'-deoxynucleotidase HDDC2-like [KO:K07023] [EC:3.1.3.89]
117932142  5'-deoxynucleotidase HDDC2-like isoform X1 [KO:K07023] [EC:3.1.3.89]
117932267  5'-deoxynucleotidase HDDC2-like isoform X1 [KO:K07023] [EC:3.1.3.89]
117923493  exopolyphosphatase PRUNE1-like [KO:K01514] [EC:3.6.1.11]
117922140  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
117914525  LOW QUALITY PROTEIN: probable GTP diphosphokinase CRSH, chloroplastic [KO:K00951] [EC:2.7.6.5]
117918309  putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [KO:K00951] [EC:2.7.6.5]
117919421  phytosulfokine receptor 1 [KO:K27625] [EC:2.7.11.1 4.6.1.2]
117920759  adenylosuccinate synthetase 2, chloroplastic [KO:K01939] [EC:6.3.4.4]
117911947  probable AMP deaminase isoform X1 [KO:K01490] [EC:3.5.4.6]
117920214  AMP deaminase isoform X1 [KO:K01490] [EC:3.5.4.6]
117928054  adenosine kinase 2-like isoform X1 [KO:K00856] [EC:2.7.1.20]
117928055  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
117934415  probable adenylate kinase 7, mitochondrial isoform X1 [KO:K00939] [EC:2.7.4.3]
117925402  adenylate kinase 4-like [KO:K00939] [EC:2.7.4.3]
117925405  adenylate kinase 5, chloroplastic isoform X1 [KO:K00939] [EC:2.7.4.3]
117928061  adenylate kinase 1, chloroplastic-like [KO:K00939] [EC:2.7.4.3]
117905228  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
117906759  adenylate kinase, chloroplastic [KO:K00939] [EC:2.7.4.3]
117929828  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
117915752  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
117912959  cancer-related nucleoside-triphosphatase [KO:K06928] [EC:3.6.1.15]
117925448  ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
117917153  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT [KO:K01522] [EC:3.6.1.29]
117914813  ATP sulfurylase 1, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
117907216  LOW QUALITY PROTEIN: ATP sulfurylase 2 [KO:K13811] [EC:2.7.7.4 2.7.1.25]
117911474  adenylyl-sulfate kinase 3-like isoform X1 [KO:K00860] [EC:2.7.1.25]
117919431  adenylyl-sulfate kinase 3 isoform X1 [KO:K00860] [EC:2.7.1.25]
117920538  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
117927573  LOW QUALITY PROTEIN: uricase-2-like [KO:K00365] [EC:1.7.3.3]
117929383  uricase-2-like [KO:K00365] [EC:1.7.3.3]
117922137  uric acid degradation bifunctional protein TTL isoform X1 [KO:K13484] [EC:3.5.2.17 4.1.1.97]
117923875  allantoinase [KO:K01466] [EC:3.5.2.5]
117925671  allantoate deiminase 2 isoform X1 [KO:K02083] [EC:3.5.3.9]
117934409  (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
117914894  ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
117924020  urease [KO:K01427] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
vri00030  Pentose phosphate pathway
vri00220  Arginine biosynthesis
vri00250  Alanine, aspartate and glutamate metabolism
vri00260  Glycine, serine and threonine metabolism
vri00340  Histidine metabolism
vri00630  Glyoxylate and dicarboxylate metabolism
vri00730  Thiamine metabolism
vri00740  Riboflavin metabolism
vri00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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