KEGG   PATHWAY: xgl00270
Entry
xgl00270                    Pathway                                
Name
Cysteine and methionine metabolism - Xiphias gladius (swordfish)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
xgl00270  Cysteine and methionine metabolism
xgl00270

Module
xgl_M00034  Methionine salvage pathway [PATH:xgl00270]
xgl_M00035  Methionine degradation [PATH:xgl00270]
xgl_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:xgl00270]
Other DBs
GO: 0006534 0006555
Organism
Xiphias gladius (swordfish) [GN:xgl]
Gene
120791029  cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
120791385  kynurenine--oxoglutarate transaminase 3-like isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
120806273  kyat1; kynurenine--oxoglutarate transaminase 1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
120798193  cbsa; cystathionine beta-synthase a [KO:K01697] [EC:4.2.1.22]
120801464  cbsb; cystathionine beta-synthase b [KO:K01697] [EC:4.2.1.22]
120805803  betaine--homocysteine S-methyltransferase 1-like isoform X1 [KO:K00544] [EC:2.1.1.5]
120806477  betaine--homocysteine S-methyltransferase 1 isoform X1 [KO:K00544] [EC:2.1.1.5]
120790575  zgc:172121; homocysteine S-methyltransferase YbgG [KO:K00547] [EC:2.1.1.10]
120794472  mtr; methionine synthase isoform X1 [KO:K00548] [EC:2.1.1.13]
120802280  mat2b; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
120805741  mat2ab; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
120794022  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
120806791  mat2aa; methionine adenosyltransferase II, alpha a isoform X1 [KO:K00789] [EC:2.5.1.6]
120796230  mat1a; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
120788992  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
120803377  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
120802706  sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
120799996  S-methyl-5'-thioadenosine phosphorylase isoform X1 [KO:K00772] [EC:2.4.2.28]
120801218  lacc1; purine nucleoside phosphorylase LACC1 isoform X1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
120800128  mri1; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
120793886  methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
120806180  enoph1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
120795491  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
120793390  tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
120797257  L-amino-acid oxidase-like isoform X1 [KO:K03334] [EC:1.4.3.2]
120792272  il4i1; L-amino-acid oxidase [KO:K03334] [EC:1.4.3.2]
120795580  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
120804804  dnmt1; DNA (cytosine-5)-methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
120788785  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
120795245  dnmt3ab; DNA (cytosine-5)-methyltransferase 3A [KO:K17398] [EC:2.1.1.37]
120803781  uncharacterized protein LOC120803781 isoform X1 [KO:K17399] [EC:2.1.1.37]
120803570  dnmt3bb.1; DNA (cytosine-5)-methyltransferase 3B isoform X1 [KO:K17399] [EC:2.1.1.37]
120803774  dnmt3ba; DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a [KO:K17399] [EC:2.1.1.37]
120803704  ahcyl1; S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
120793191  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
120800100  ahcyl2b; adenosylhomocysteinase like 2b isoform X1 [KO:K01251] [EC:3.13.2.1]
120782954  S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
120807337  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
120806165  branched-chain-amino-acid aminotransferase, cytosolic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
120805928  alanine--glyoxylate aminotransferase 2, mitochondrial-like isoform X1 [KO:K00827] [EC:2.6.1.44 2.6.1.40]
120806349  alanine--glyoxylate aminotransferase 2, mitochondrial-like [KO:K00827] [EC:2.6.1.44 2.6.1.40]
120796059  gclc; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
120790349  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
120804370  gss; glutathione synthetase isoform X1 [KO:K21456] [EC:6.3.2.3]
120804371  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
120804632  cdo1; cysteine dioxygenase type 1 isoform X1 [KO:K00456] [EC:1.13.11.20]
120796870  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
120804963  got1l1; putative aspartate aminotransferase, cytoplasmic 2 [KO:K14454] [EC:2.6.1.1]
120800162  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
120792123  got2b; glutamic-oxaloacetic transaminase 2b, mitochondrial [KO:K14455] [EC:2.6.1.1]
120788170  mpst; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
120800038  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
120797685  ldhba; L-lactate dehydrogenase B-A chain isoform X1 [KO:K00016] [EC:1.1.1.27]
120793235  ldha; L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
120793776  ldhbb; L-lactate dehydrogenase B-B chain [KO:K00016] [EC:1.1.1.27]
120800474  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
120796014  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) isoform X1 [KO:K00025] [EC:1.1.1.37]
120784038  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
120805291  L-serine dehydratase/L-threonine deaminase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
120794974  sdsl; serine dehydratase-like isoform X1 [KO:K17989] [EC:4.3.1.17 4.3.1.19]
120801090  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
120804791  psat1; phosphoserine aminotransferase isoform X1 [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
xgl00010  Glycolysis / Gluconeogenesis
xgl00250  Alanine, aspartate and glutamate metabolism
xgl00260  Glycine, serine and threonine metabolism
xgl00290  Valine, leucine and isoleucine biosynthesis
xgl00430  Taurine and hypotaurine metabolism
xgl00480  Glutathione metabolism
xgl00620  Pyruvate metabolism
xgl00640  Propanoate metabolism
xgl00770  Pantothenate and CoA biosynthesis
xgl00900  Terpenoid backbone biosynthesis
xgl00920  Sulfur metabolism
KO pathway
ko00270   
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