KEGG   PATHWAY: xtr00240
Entry
xtr00240                    Pathway                                
Name
Pyrimidine metabolism - Xenopus tropicalis (tropical clawed frog)
Class
Metabolism; Nucleotide metabolism
Pathway map
xtr00240  Pyrimidine metabolism
xtr00240

Module
xtr_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:xtr00240]
xtr_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:xtr00240]
xtr_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:xtr00240]
xtr_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:xtr00240]
xtr_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:xtr00240]
Other DBs
GO: 0006220 0006213
Organism
Xenopus tropicalis (tropical clawed frog) [GN:xtr]
Gene
100125119  cad; CAD protein isoform X1 [KO:K11540] [EC:6.3.5.5 2.1.3.2 3.5.2.3]
594963  dhodh; dihydroorotate dehydrogenase (quinone), mitochondrial [KO:K00254] [EC:1.3.5.2]
496817  umps; uridine 5'-monophosphate synthase [KO:K13421] [EC:2.4.2.10 4.1.1.23]
733534  cmpk1; UMP-CMP kinase isoform 1 [KO:K13800] [EC:2.7.4.14]
100493600  cmpk2; UMP-CMP kinase 2, mitochondrial isoform X1 [KO:K13809] [EC:2.7.4.14]
448725  nme2; nucleoside diphosphate kinase B [KO:K00940] [EC:2.7.4.6]
448695  nme3; nucleoside diphosphate kinase 3 precursor [KO:K00940] [EC:2.7.4.6]
100170458  nme6; nucleoside diphosphate kinase 6 [KO:K00940] [EC:2.7.4.6]
394498  nme7; nucleoside diphosphate kinase 7 [KO:K00940] [EC:2.7.4.6]
734101  nme4; nucleoside diphosphate kinase, mitochondrial [KO:K00940] [EC:2.7.4.6]
100144994  ak9; adenylate kinase 9 isoform X1 [KO:K18533] [EC:2.7.4.3 2.7.4.6]
448501  entpd1; ectonucleoside triphosphate diphosphohydrolase 1 [KO:K01510] [EC:3.6.1.5]
100125010  entpd3; ectonucleoside triphosphate diphosphohydrolase 3 [KO:K01510] [EC:3.6.1.5]
733458  entpd8; ectonucleoside triphosphate diphosphohydrolase 8 [KO:K01510] [EC:3.6.1.5]
394537  cant1; soluble calcium-activated nucleotidase 1 [KO:K12304] [EC:3.6.1.6]
677731  entpd4; ectonucleoside triphosphate diphosphohydrolase 4 [KO:K12305] [EC:3.6.1.6]
677734  entpd5; ectonucleoside triphosphate diphosphohydrolase 5 precursor [KO:K01511] [EC:3.6.1.6]
677735  entpd6; ectonucleoside triphosphate diphosphohydrolase 6 isoform X1 [KO:K01511] [EC:3.6.1.6]
100422807  enpp1; ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
100422808  enpp3; ectonucleotide pyrophosphatase/phosphodiesterase family member 3 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
548765  asmtl; N-acetylserotonin O-methyltransferase-like protein [KO:K25435] [EC:3.6.1.- 2.1.1.-]
448765  nudt2; bis(5'-nucleosyl)-tetraphosphatase [KO:K01518] [EC:3.6.1.17]
100145472  ctps2; CTP synthase 2 [KO:K01937] [EC:6.3.4.2]
100379698  ctps1; CTP synthase 1 isoform X1 [KO:K01937] [EC:6.3.4.2]
100145292  uck2; uridine-cytidine kinase 2 [KO:K00876] [EC:2.7.1.48]
548589  uckl1; uridine-cytidine kinase-like 1 [KO:K00876] [EC:2.7.1.48]
100491950  uck1; uridine-cytidine kinase 1 [KO:K00876] [EC:2.7.1.48]
116407971  uridine-cytidine kinase-like 1 isoform X1 [KO:K00876] [EC:2.7.1.48]
448172  nt5m; 5'(3')-deoxyribonucleotidase, mitochondrial [KO:K01081] [EC:3.1.3.5]
394700  nt5c1a; cytosolic 5'-nucleotidase 1B [KO:K01081] [EC:3.1.3.5]
548490  nt5c2; cytosolic purine 5'-nucleotidase [KO:K01081] [EC:3.1.3.5]
100495335  cytosolic 5'-nucleotidase 1A [KO:K01081] [EC:3.1.3.5]
100496104  nt5dc4; 5'-nucleotidase domain-containing protein 4 [KO:K01081] [EC:3.1.3.5]
100489347  nt5e; 5'-nucleotidase [KO:K19970] [EC:3.1.3.5]
493536  upp2; uridine phosphorylase 2 [KO:K00757] [EC:2.4.2.3]
496532  upp1; uridine phosphorylase 1 [KO:K00757] [EC:2.4.2.3]
100485794  pseudouridine-metabolizing bifunctional protein C1861.05 [KO:K16330] [EC:4.2.1.70 2.7.1.83]
100145170  nt5c3a; cytosolic 5'-nucleotidase 3A [KO:K24242] [EC:3.1.3.91]
100170453  nt5c3b; 7-methylguanosine phosphate-specific 5'-nucleotidase [KO:K24242] [EC:3.1.3.91]
549971  cda; cytidine deaminase [KO:K01489] [EC:3.5.4.5]
100145720  rrm1; ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
394645  rrm2.1; ribonucleotide reductase M2, gene 1 [KO:K10808] [EC:1.17.4.1]
493274  rrm2.2; ribonucleoside-diphosphate reductase subunit M2 [KO:K10808] [EC:1.17.4.1]
100144925  rrm2b; ribonucleoside-diphosphate reductase subunit M2 B [KO:K10808] [EC:1.17.4.1]
493314  dctpp1; dCTP pyrophosphatase 1 [KO:K16904] [EC:3.6.1.12]
100379693  hddc2; HD domain-containing protein 2 isoform X1 [KO:K07023] [EC:3.1.3.89]
594934  dck.1; deoxycytidine kinase [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
549546  dck.2; deoxycytidine kinase, gene 2 [KO:K00893] [EC:2.7.1.74 2.7.1.76 2.7.1.113]
549019  dctd; deoxycytidylate deaminase [KO:K01493] [EC:3.5.4.12]
448574  dtymk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
101733437  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial [KO:K01520] [EC:3.6.1.23]
100145512  tymp; thymidine phosphorylase [KO:K00758] [EC:2.4.2.4]
496942  tk1; thymidine kinase, cytosolic [KO:K00857] [EC:2.7.1.21]
549642  tk2; thymidine kinase 2, mitochondrial [KO:K00857] [EC:2.7.1.21]
780313  tyms; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
734021  dpyd; dihydropyrimidine dehydrogenase [NADP(+)] isoform X1 [KO:K00207] [EC:1.3.1.2]
100491365  dpys; dihydropyrimidinase isoform X2 [KO:K01464] [EC:3.5.2.2]
100145317  upb1; beta-ureidopropionase [KO:K01431] [EC:3.5.1.6]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
xtr00030  Pentose phosphate pathway
xtr00220  Arginine biosynthesis
xtr00250  Alanine, aspartate and glutamate metabolism
xtr00280  Valine, leucine and isoleucine degradation
xtr00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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