KEGG   PATHWAY: plum00260
Entry
plum00260                   Pathway                                
Name
Glycine, serine and threonine metabolism - Photorhabdus laumondii subsp. laumondii DSPV002N
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
plum00260  Glycine, serine and threonine metabolism
plum00260

Module
plum_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:plum00260]
plum_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:plum00260]
plum_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:plum00260]
plum_M00621  Glycine cleavage system [PATH:plum00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Photorhabdus laumondii subsp. laumondii DSPV002N [GN:plum]
Gene
A4R40_21700  lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
A4R40_02790  thrA; bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
A4R40_23665  metL; bifunctional aspartate kinase/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
A4R40_00040  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
A4R40_02795  homoserine kinase [KO:K00872] [EC:2.7.1.39]
A4R40_02800  threonine synthase [KO:K01733] [EC:4.2.3.1]
A4R40_16440  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
A4R40_10465  ghrA; glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
A4R40_20350  glycerate kinase [KO:K00865] [EC:2.7.1.165]
A4R40_07480  gpmA; phosphoglyceromutase [KO:K01834] [EC:5.4.2.11]
A4R40_02770  phosphoglycerate mutase [KO:K15634] [EC:5.4.2.11]
A4R40_17925  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
A4R40_08195  phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
A4R40_02730  serB; phosphoserine phosphatase [KO:K01079] [EC:3.1.3.3]
A4R40_11190  NAD(P)-dependent oxidoreductase [KO:K16066] [EC:1.1.1.381 1.1.1.-]
A4R40_24090  glycine C-acetyltransferase [KO:K00639] [EC:2.3.1.29]
A4R40_24085  tdh; L-threonine 3-dehydrogenase [KO:K00060] [EC:1.1.1.103]
A4R40_17875  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
A4R40_17885  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
A4R40_17990  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A4R40_17880  glycine cleavage system protein H [KO:K02437]
A4R40_00770  amidinotransferase [KO:K00613] [EC:2.1.4.1]
A4R40_06330  pssA; phosphatidylserine synthase [KO:K00998] [EC:2.7.8.8]
A4R40_22335  CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
A4R40_11725  gamma-aminobutyraldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
A4R40_02600  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
A4R40_02595  cystathionine beta-lyase [KO:K01758] [EC:4.4.1.1]
A4R40_13430  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
A4R40_23220  PLP-dependent threonine dehydratase [KO:K01754] [EC:4.3.1.19]
A4R40_09870  D-serine dehydratase [KO:K01753] [EC:4.3.1.18]
A4R40_12285  tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
A4R40_12280  tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
A4R40_17590  diaminobutyrate--2-oxoglutarate transaminase [KO:K00836] [EC:2.6.1.76]
A4R40_21140  diaminobutyrate--2-oxoglutarate transaminase [KO:K00836] [EC:2.6.1.76]
A4R40_22940  decarboxylase [KO:K13745] [EC:4.1.1.86]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
plum00010  Glycolysis / Gluconeogenesis
plum00020  Citrate cycle (TCA cycle)
plum00230  Purine metabolism
plum00250  Alanine, aspartate and glutamate metabolism
plum00270  Cysteine and methionine metabolism
plum00290  Valine, leucine and isoleucine biosynthesis
plum00300  Lysine biosynthesis
plum00330  Arginine and proline metabolism
plum00460  Cyanoamino acid metabolism
plum00470  D-Amino acid metabolism
plum00564  Glycerophospholipid metabolism
plum00600  Sphingolipid metabolism
plum00620  Pyruvate metabolism
plum00630  Glyoxylate and dicarboxylate metabolism
plum00640  Propanoate metabolism
plum00680  Methane metabolism
plum00860  Porphyrin metabolism
plum00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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