KEGG   PATHWAY: ppsh00260
Entry
ppsh00260                   Pathway                                
Name
Glycine, serine and threonine metabolism - Pseudomonas psychrophila
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
ppsh00260  Glycine, serine and threonine metabolism
ppsh00260

Module
ppsh_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:ppsh00260]
ppsh_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:ppsh00260]
ppsh_M00555  Betaine biosynthesis, choline => betaine [PATH:ppsh00260]
ppsh_M00621  Glycine cleavage system [PATH:ppsh00260]
ppsh_M00975  Betaine degradation, bacteria, betaine => pyruvate [PATH:ppsh00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Pseudomonas psychrophila [GN:ppsh]
Gene
G5J76_00600  [KO:K16066] [EC:1.1.1.381 1.1.1.-]
G5J76_00860  serB; phosphoserine phosphatase SerB [KO:K01079] [EC:3.1.3.3]
G5J76_01715  [KO:K15633] [EC:5.4.2.12]
G5J76_01910  dsdA; D-serine ammonia-lyase [KO:K01753] [EC:4.3.1.18]
G5J76_02045  gcvH; glycine cleavage system protein GcvH [KO:K02437]
G5J76_02050  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
G5J76_03275  [KO:K01695] [EC:4.2.1.20]
G5J76_03280  trpB; tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
G5J76_03360  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
G5J76_03980  [KO:K02204] [EC:2.7.1.39]
G5J76_04120  ilvA; threonine ammonia-lyase, biosynthetic [KO:K01754] [EC:4.3.1.19]
G5J76_04700  betA; choline dehydrogenase [KO:K00108] [EC:1.1.99.1]
G5J76_04705  betB; betaine-aldehyde dehydrogenase [KO:K00130] [EC:1.2.1.8]
G5J76_04735  [KO:K01752] [EC:4.3.1.17]
G5J76_04795  dgcA; dimethylglycine demethylation protein DgcA [KO:K21833] [EC:1.5.7.3]
G5J76_04800  dgcB; dimethylglycine demethylation protein DgcB [KO:K21834]
G5J76_04805  [KO:K25960]
G5J76_04810  [KO:K25961]
G5J76_04815  gbcA; glycine-betaine demethylase subunit GbcA [KO:K00479] [EC:1.14.13.251]
G5J76_04820  gbcB; glycine-betaine demethylase subunit GbcB [KO:K21832] [EC:1.14.13.251]
G5J76_04835  [KO:K01620] [EC:4.1.2.48]
G5J76_04840  [KO:K00600] [EC:2.1.2.1]
G5J76_04845  [KO:K00303] [EC:1.5.3.24 1.5.3.1]
G5J76_04850  [KO:K00304] [EC:1.5.3.24 1.5.3.1]
G5J76_04855  [KO:K00302] [EC:1.5.3.24 1.5.3.1]
G5J76_04860  soxG; sarcosine oxidase subunit gamma family protein [KO:K00305] [EC:1.5.3.24 1.5.3.1]
G5J76_06310  [KO:K00600] [EC:2.1.2.1]
G5J76_06855  [KO:K00018] [EC:1.1.1.29]
G5J76_11135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G5J76_11540  serC; 3-phosphoserine/phosphohydroxythreonine transaminase [KO:K00831] [EC:2.6.1.52]
G5J76_12815  asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
G5J76_14790  [KO:K00865] [EC:2.7.1.165]
G5J76_14795  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K00998] [EC:2.7.8.8]
G5J76_15080  [KO:K12972] [EC:1.1.1.79 1.1.1.81]
G5J76_16115  [KO:K00003] [EC:1.1.1.3]
G5J76_16125  [KO:K01733] [EC:4.2.3.1]
G5J76_16865  [KO:K25317]
G5J76_16960  [KO:K08688] [EC:3.5.3.3]
G5J76_17425  [KO:K01754] [EC:4.3.1.19]
G5J76_18250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G5J76_20865  [KO:K00928] [EC:2.7.2.4]
G5J76_20875  ltaE; low-specificity L-threonine aldolase [KO:K01620] [EC:4.1.2.48]
G5J76_21295  gcvH; glycine cleavage system protein GcvH [KO:K02437]
G5J76_21300  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
G5J76_21305  [KO:K01752] [EC:4.3.1.17]
G5J76_21310  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
G5J76_21925  [KO:K01733] [EC:4.2.3.1]
G5J76_21930  [KO:K00003] [EC:1.1.1.3]
G5J76_22350  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
G5J76_23245  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
C23135  (2S,3S)-2-Acetamido-3-hydroxy-4-aminobutyrate
C23136  4-Amino-L-allothreonine
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
ppsh00010  Glycolysis / Gluconeogenesis
ppsh00020  Citrate cycle (TCA cycle)
ppsh00230  Purine metabolism
ppsh00250  Alanine, aspartate and glutamate metabolism
ppsh00270  Cysteine and methionine metabolism
ppsh00290  Valine, leucine and isoleucine biosynthesis
ppsh00300  Lysine biosynthesis
ppsh00330  Arginine and proline metabolism
ppsh00460  Cyanoamino acid metabolism
ppsh00470  D-Amino acid metabolism
ppsh00564  Glycerophospholipid metabolism
ppsh00600  Sphingolipid metabolism
ppsh00620  Pyruvate metabolism
ppsh00630  Glyoxylate and dicarboxylate metabolism
ppsh00640  Propanoate metabolism
ppsh00680  Methane metabolism
ppsh00860  Porphyrin metabolism
ppsh00920  Sulfur metabolism
KO pathway
ko00260   

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