KEGG   PATHWAY: sil00330
Entry
sil00330                    Pathway                                
Name
Arginine and proline metabolism - Ruegeria pomeroyi
Class
Metabolism; Amino acid metabolism
Pathway map
sil00330  Arginine and proline metabolism
sil00330

Module
sil_M00015  Proline biosynthesis, glutamate => proline [PATH:sil00330]
sil_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:sil00330]
sil_M00970  Proline degradation, proline => glutamate [PATH:sil00330]
Other DBs
GO: 0006525 0006560
Organism
Ruegeria pomeroyi [GN:sil]
Gene
SPO2806  cytosine deaminase, putative [KO:K01485] [EC:3.5.4.1 3.5.4.21]
SPO1472  hyuA; hydantoin utilization protein A [KO:K01473] [EC:3.5.2.14]
SPO1695  hydantoin utilization protein, putative [KO:K01473] [EC:3.5.2.14]
SPO1473  hydantoin utilization protein B, putative [KO:K01474] [EC:3.5.2.14]
SPO1696  hydantoinase/oxoprolinase family protein [KO:K01474] [EC:3.5.2.14]
SPO3327  creatinase [KO:K08688] [EC:3.5.3.3]
SPO0602  speA; arginine decarboxylase [KO:K01585] [EC:4.1.1.19]
SPO0678  agmatinase, putative [KO:K01480] [EC:3.5.3.11]
SPO2467  speB-3; agmatinase [KO:K01480] [EC:3.5.3.11]
SPO2980  porphyromonas-type peptidyl-arginine deiminase family protein [KO:K10536] [EC:3.5.3.12]
SPO0601  saccharopine dehydrogenase [KO:K27502] [EC:1.5.1.55]
SPO0600  nspC; carboxynorspermidine decarboxylase [KO:K27684] [EC:4.1.1.127]
SPO0599  speB-1; agmatinase [KO:K27683] [EC:3.5.3.24]
SPO0364  decarboxylase, pyridoxal-dependent [KO:K01581] [EC:4.1.1.17]
SPO3471  aminotransferase, class III [KO:K12256] [EC:2.6.1.113]
SPOA0113  aminotransferase, class III [KO:K12256] [EC:2.6.1.113]
SPO3382  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
SPO3368  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
SPO0097  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
SPO2132  aspC-3; aspartate aminotransferase [KO:K12252] [EC:2.6.1.84]
SPOA0066  aspartate aminotransferase, putative [KO:K12252] [EC:2.6.1.84]
SPO2464  speB-2; agmatinase [KO:K12255] [EC:3.5.3.7]
SPO2583  amidase family protein [KO:K01426] [EC:3.5.1.4]
SPO2938  amidase family protein [KO:K01426] [EC:3.5.1.4]
SPO2527  nylA; 6-aminohexanoate-cyclic-dimer hydrolase [KO:K01426] [EC:3.5.1.4]
SPOA0209  oxidoreductase, FAD-binding protein [KO:K09471] [EC:1.4.3.-]
SPOA0377  aldehyde dehydrogenase family protein [KO:K09472] [EC:1.2.1.99]
SPOA0353  aldehyde dehydrogenase family protein [KO:K09472] [EC:1.2.1.99]
SPO2119  rocF; arginase [KO:K01476] [EC:3.5.3.1]
SPO0911  proC; pyrroline-5-carboxylate reductase [KO:K00286] [EC:1.5.1.2]
SPO0165  pyrroline-5-carboxylate reductase, putative [KO:K00286] [EC:1.5.1.2]
SPO3010  putA; bifunctional PutA protein [KO:K13821] [EC:1.5.5.2 1.2.1.88]
SPO2121  arcB; ornithine cyclodeaminase [KO:K01750] [EC:4.3.1.12]
SPO1985  proB; glutamate 5-kinase [KO:K00931] [EC:2.7.2.11]
SPO1984  proA; gamma-glutamyl phosphate reductase [KO:K00147] [EC:1.2.1.41]
SPO0066  pip; proline iminopeptidase [KO:K01259] [EC:3.4.11.5]
SPO1264  aspC-2; aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
SPO0584  aspC-1; aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
SPO3720  tyrB; aromatic amino acid aminotransferase [KO:K00813] [EC:2.6.1.1]
SPO3604  D-amino acid aminotransferase, putative [KO:K00824] [EC:2.6.1.21]
SPO0607  proline racemase, putative [KO:K22548] [EC:4.2.1.77]
SPO1594  mandelate racemase/muconate lactonizing enzyme, putative [KO:K21624] [EC:4.2.1.171]
SPO1595  mandelate racemase/muconate lactonizing enzyme [KO:K21624] [EC:4.2.1.171]
SPO0606  hypothetical protein [KO:K09123] [EC:4.2.1.171]
Compound
C00012  Peptide
C00019  S-Adenosyl-L-methionine
C00022  Pyruvate
C00025  L-Glutamate
C00048  Glyoxylate
C00062  L-Arginine
C00077  L-Ornithine
C00086  Urea
C00134  Putrescine
C00148  L-Proline
C00179  Agmatine
C00213  Sarcosine
C00223  p-Coumaroyl-CoA
C00300  Creatine
C00315  Spermidine
C00334  4-Aminobutanoate
C00406  Feruloyl-CoA
C00431  5-Aminopentanoate
C00436  N-Carbamoylputrescine
C00441  L-Aspartate 4-semialdehyde
C00533  Nitric oxide
C00555  4-Aminobutyraldehyde
C00581  Guanidinoacetate
C00750  Spermine
C00763  D-Proline
C00791  Creatinine
C00884  Homocarnosine
C00986  1,3-Diaminopropane
C01035  4-Guanidinobutanoate
C01043  N-Carbamoylsarcosine
C01110  5-Amino-2-oxopentanoic acid
C01137  S-Adenosylmethioninamine
C01157  Hydroxyproline
C01165  L-Glutamate 5-semialdehyde
C01250  N-Acetyl-L-glutamate 5-semialdehyde
C01682  Nopaline
C02305  Phosphocreatine
C02565  N-Methylhydantoin
C02647  4-Guanidinobutanal
C02714  N-Acetylputrescine
C02946  4-Acetamidobutanoate
C03078  4-Guanidinobutanamide
C03166  Phosphoguanidinoacetate
C03287  L-Glutamyl 5-phosphate
C03296  N2-Succinyl-L-arginine
C03375  Norspermidine
C03415  N2-Succinyl-L-ornithine
C03564  1-Pyrroline-2-carboxylate
C03771  5-Guanidino-2-oxopentanoate
C03912  (S)-1-Pyrroline-5-carboxylate
C04137  Octopine
C04281  L-1-Pyrroline-3-hydroxy-5-carboxylate
C05147  trans-3-Hydroxy-L-proline
C05931  N-Succinyl-L-glutamate
C05932  N-Succinyl-L-glutamate 5-semialdehyde
C05933  N(omega)-Hydroxyarginine
C05936  N4-Acetylaminobutanal
C05938  L-4-Hydroxyglutamate semialdehyde
C05945  L-Arginine phosphate
C05946  (4R)-4-Hydroxy-2-oxoglutarate
C05947  L-erythro-4-Hydroxyglutamate
C10497  Feruloylputrescine
C15699  gamma-L-Glutamylputrescine
C15700  gamma-Glutamyl-gamma-aminobutyraldehyde
C15767  4-(L-gamma-Glutamylamino)butanoate
C18172  Carboxyspermidine
C18174  Carboxynorspermidine
C18326  p-Coumaroylputrescine
C19706  cis-3-Hydroxy-L-proline
C20560  N1-(3-Aminopropyl)agmatine
C22886  N1-[(S)-3-amino-3-carboxypropyl]agmatine
Reference
PMID:5288244
  Authors
Haake P, Allen GW.
  Title
Studies on phosphorylation by phosphoroguanidinates. The mechanism of action of creatine: ATP transphosphorylase (creatine kinase).
  Journal
Proc Natl Acad Sci U S A 68:2691-3 (1971)
DOI:10.1073/pnas.68.11.2691
Reference
PMID:16499623
  Authors
Kurihara S, Oda S, Kumagai H, Suzuki H.
  Title
Gamma-glutamyl-gamma-aminobutyrate hydrolase in the putrescine utilization pathway of Escherichia coli K-12.
  Journal
FEMS Microbiol Lett 256:318-23 (2006)
DOI:10.1111/j.1574-6968.2006.00137.x
Reference
PMID:15590624
  Authors
Kurihara S, Oda S, Kato K, Kim HG, Koyanagi T, Kumagai H, Suzuki H.
  Title
A novel putrescine utilization pathway involves gamma-glutamylated intermediates of Escherichia coli K-12.
  Journal
J Biol Chem 280:4602-8 (2005)
DOI:10.1074/jbc.M411114200
Related
pathway
sil00020  Citrate cycle (TCA cycle)
sil00220  Arginine biosynthesis
sil00250  Alanine, aspartate and glutamate metabolism
sil00260  Glycine, serine and threonine metabolism
sil00270  Cysteine and methionine metabolism
sil00310  Lysine degradation
sil00410  beta-Alanine metabolism
sil00470  D-Amino acid metabolism
sil00480  Glutathione metabolism
sil00630  Glyoxylate and dicarboxylate metabolism
sil00650  Butanoate metabolism
sil00770  Pantothenate and CoA biosynthesis
KO pathway
ko00330   
LinkDB

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