KEGG   PATHWAY: acer03040
Entry
acer03040                   Pathway                                
Name
Spliceosome - Apis cerana (Asiatic honeybee)
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
acer03040  Spliceosome
acer03040

Other DBs
GO: 0005681
PDB: 5O9Z 5Z56 6FF7 8I0W
Organism
Apis cerana (Asiatic honeybee) [GN:acer]
Gene
107992416  [KO:K12843]
107992425  [KO:K12621]
107992575  [KO:K12873]
107992644  [KO:K12812] [EC:5.6.2.7]
107992652  [KO:K12623]
107992774  [KO:K12896]
107993056  [KO:K11097]
107993125  [KO:K12864]
107993214  [KO:K12840]
107993243  [KO:K13106]
107993266  [KO:K12872]
107993390  [KO:K12813] [EC:5.6.2.6]
107993404  [KO:K12831]
107993747  [KO:K12848]
107993883  [KO:K12867]
107994015  [KO:K11096]
107994076  [KO:K12880]
107994354  [KO:K13025] [EC:5.6.2.7]
107994406  [KO:K12829]
107994467  [KO:K12870]
107994478  [KO:K12626]
107994482  [KO:K12849]
107994504  [KO:K12869]
107994703  [KO:K12896]
107994769  [KO:K28450]
107994859  [KO:K03283]
107994974  [KO:K12859]
107995040  [KO:K12857]
107995111  [KO:K12893]
107995162  [KO:K13098]
107995198  [KO:K11095]
107995323  [KO:K12823] [EC:5.6.2.7]
107995368  [KO:K28527]
107995579  [KO:K12871]
107995615  [KO:K12847]
107995677  [KO:K12825]
107995853  [KO:K12882]
107995951  [KO:K12855]
107995959  [KO:K12830]
107995981  [KO:K12741]
107996181  [KO:K12818] [EC:5.6.2.6]
107996311  [KO:K12820] [EC:5.6.2.6]
107996313  [KO:K03283]
107996379  [KO:K12879]
107996690  [KO:K12881]
107996846  [KO:K12822]
107997222  [KO:K12624]
107997230  [KO:K11093]
107997260  [KO:K10599] [EC:2.3.2.27]
107997264  [KO:K12877]
107997298  [KO:K09567] [EC:5.2.1.8]
107997304  [KO:K13175]
107997320  [KO:K13176]
107997321  [KO:K11984]
107997627  [KO:K12874]
107997664  [KO:K12856]
107997744  [KO:K12823] [EC:5.6.2.7]
107997763  [KO:K12897]
107997774  [KO:K12878]
107997839  [KO:K11087]
107997897  [KO:K13095]
107997921  [KO:K12862]
107997949  [KO:K12819]
107997958  [KO:K11094]
107998041  [KO:K12627]
107998075  [KO:K12839]
107998140  [KO:K12832]
107998167  [KO:K12828]
107998583  [KO:K12837]
107998625  [KO:K12860]
107998628  [KO:K12817]
107998723  [KO:K12886]
107998745  [KO:K12891]
107998812  [KO:K12852]
107999158  [KO:K11086]
107999159  [KO:K12883]
107999390  [KO:K12824]
107999411  [KO:K12866]
107999500  [KO:K12821]
107999569  [KO:K12842]
107999951  [KO:K13174]
107999970  [KO:K12834]
108000041  [KO:K12815] [EC:5.6.2.6]
108000118  [KO:K12845]
108000316  [KO:K12838]
108000349  [KO:K11092]
108000356  [KO:K12827]
108000494  [KO:K12826]
108000886  [KO:K12816]
108000986  [KO:K12868]
108001005  [KO:K12811] [EC:5.6.2.7]
108001022  [KO:K12858] [EC:5.6.2.7]
108001064  [KO:K12844]
108001075  [KO:K12846]
108001093  [KO:K12850]
108001176  [KO:K09564] [EC:5.2.1.8]
108001184  [KO:K11098]
108001874  [KO:K12622]
108001970  [KO:K12836]
108002035  [KO:K12625]
108002120  [KO:K12863]
108002128  [KO:K12854] [EC:5.6.2.6]
108002187  [KO:K14323]
108002274  [KO:K12861]
108002276  [KO:K11099]
108002434  [KO:K13108]
108002449  [KO:K06063]
108002633  [KO:K12835] [EC:5.6.2.7]
108002677  [KO:K13101]
108002771  [KO:K12890]
108003167  [KO:K12823] [EC:5.6.2.7]
108003178  [KO:K12823] [EC:5.6.2.7]
108003441  [KO:K11088]
108003565  [KO:K12662]
108003719  [KO:K12841]
108003789  [KO:K12896]
108003998  [KO:K12833]
108004456  [KO:K12876]
114576910  [KO:K14277]
114577154  [KO:K14276]
114577155  [KO:K14276]
114577229  [KO:K14280]
114577230  [KO:K14280]
114577306  [KO:K14276]
114577335  [KO:K14278]
114577480  [KO:K14278]
114577495  [KO:K14277]
114577604  [KO:K14279]
114577788  [KO:K14276]
114577789  [KO:K14279]
114577790  [KO:K14276]
114577791  [KO:K14276]
114577792  [KO:K14276]
114577793  [KO:K14279]
114578016  [KO:K14276]
114578043  [KO:K14277]
114578207  [KO:K14279]
114578291  [KO:K14277]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
Reference
  Authors
Bertram K, Agafonov DE, Dybkov O, Haselbach D, Leelaram MN, Will CL, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.
  Journal
Cell 170:701-713.e11 (2017)
DOI:10.1016/j.cell.2017.07.011
Reference
  Authors
Zhang X, Yan C, Zhan X, Li L, Lei J, Shi Y
  Title
Structure of the human activated spliceosome in three conformational states.
  Journal
Cell Res 28:307-322 (2018)
DOI:10.1038/cr.2018.14
Reference
  Authors
Haselbach D, Komarov I, Agafonov DE, Hartmuth K, Graf B, Dybkov O, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Structure and Conformational Dynamics of the Human Spliceosomal B(act) Complex.
  Journal
Cell 172:454-464.e11 (2018)
DOI:10.1016/j.cell.2018.01.010
Reference
  Authors
Zhan X, Lu Y, Shi Y
  Title
Molecular basis for the activation of human spliceosome.
  Journal
Nat Commun 15:6348 (2024)
DOI:10.1038/s41467-024-50785-0
KO pathway
ko03040   

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