KEGG   PATHWAY: ago03040
Entry
ago03040                    Pathway                                
Name
Spliceosome - Eremothecium gossypii
Description
After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.
Class
Genetic Information Processing; Transcription
Pathway map
ago03040  Spliceosome
ago03040

Other DBs
GO: 0005681
PDB: 5O9Z 5Z56 6FF7 8I0W
Organism
Eremothecium gossypii [GN:ago]
Gene
AGOS_AAR020W  [KO:K12818] [EC:5.6.2.6]
AGOS_AAR051C  [KO:K12873]
AGOS_AAR116W  [KO:K11097]
AGOS_AAR131W  [KO:K12867]
AGOS_AAR180C  [KO:K12820] [EC:5.6.2.6]
AGOS_ABL059W  [KO:K12831]
AGOS_ABL100W  [KO:K12855]
AGOS_ABL174C  [KO:K03283]
AGOS_ABR024C  [KO:K28527]
AGOS_ABR103C  [KO:K12834]
AGOS_ABR207W  [KO:K12856]
AGOS_ACL060C  [KO:K10599] [EC:2.3.2.27]
AGOS_ACL125C  [KO:K12627]
AGOS_ACR039C  [KO:K13108]
AGOS_ACR137W  [KO:K12862]
AGOS_ACR204C  [KO:K12625]
AGOS_ADL047W  [KO:K13106]
AGOS_ADL063W  [KO:K11093]
AGOS_ADL355W  [KO:K12836]
AGOS_ADL374W  [KO:K12859]
AGOS_ADR017W  [KO:K13107]
AGOS_ADR032W  [KO:K12844]
AGOS_ADR108C  [KO:K12857]
AGOS_ADR130W  [KO:K12837]
AGOS_ADR159C  [KO:K12821]
AGOS_ADR224W  [KO:K12815] [EC:5.6.2.6]
AGOS_ADR260C  [KO:K12812] [EC:5.6.2.7]
AGOS_ADR281W  [KO:K12848]
AGOS_ADR287C  [KO:K12814] [EC:5.6.2.6]
AGOS_ADR334W  [KO:K12828]
AGOS_ADR361W  [KO:K06063]
AGOS_AEL014C  [KO:K12826]
AGOS_AEL070W  [KO:K12845]
AGOS_AEL085W  [KO:K12827]
AGOS_AEL124W  [KO:K12853]
AGOS_AEL234C  [KO:K12843]
AGOS_AEL269C  [KO:K12662]
AGOS_AEL274C  [KO:K11098]
AGOS_AER125C  [KO:K12622]
AGOS_AER187W  [KO:K03283]
AGOS_AER205W  [KO:K11087]
AGOS_AER206C  [KO:K12851]
AGOS_AER255C  [KO:K12816]
AGOS_AER344W  [KO:K12860]
AGOS_AER408W  [KO:K13025] [EC:5.6.2.7]
AGOS_AER432C  [KO:K11086]
AGOS_AFL027C  [KO:K12811] [EC:5.6.2.7]
AGOS_AFL050W  [KO:K12883]
AGOS_AFL109W  [KO:K11092]
AGOS_AFL221C  [KO:K12823] [EC:5.6.2.7]
AGOS_AFR053C  [KO:K12626]
AGOS_AFR058C  [KO:K12879]
AGOS_AFR059W  [KO:K12832]
AGOS_AFR114W  [KO:K03283]
AGOS_AFR149C  [KO:K12881]
AGOS_AFR182C  [KO:K12621]
AGOS_AFR218W  [KO:K12882]
AGOS_AFR308W  [KO:K12868]
AGOS_AFR327C  [KO:K11984]
AGOS_AFR363W  [KO:K12870]
AGOS_AFR382W  [KO:K12830]
AGOS_AFR392C  [KO:K28512]
AGOS_AFR452C  [KO:K12858] [EC:5.6.2.7]
AGOS_AFR503W  [KO:K12817]
AGOS_AFR511C  [KO:K11099]
AGOS_AFR539C  [KO:K12829]
AGOS_AFR634W  [KO:K12880]
AGOS_AFR645W  [KO:K12825]
AGOS_AGL157C  [KO:K11088]
AGOS_AGL168W  [KO:K12863]
AGOS_AGL183C  [KO:K13095]
AGOS_AGL184W  [KO:K12869]
AGOS_AGL296W  [KO:K12623]
AGOS_AGR007C  [KO:K12847]
AGOS_AGR032W  [KO:K12872]
AGOS_AGR113W  [KO:K12854] [EC:5.6.2.6]
AGOS_AGR130W  [KO:K12624]
AGOS_AGR159C  [KO:K12819]
AGOS_AGR277W  [KO:K11096]
AGOS_AgSNR14  [KO:K14278]
AGOS_AgSNR19U1  [KO:K14276]
AGOS_AgSNR20  [KO:K14277]
AGOS_AgSNR6U6  [KO:K14280]
Reference
  Authors
Wahl MC, Will CL, Luhrmann R
  Title
The spliceosome: design principles of a dynamic RNP machine.
  Journal
Cell 136:701-18 (2009)
DOI:10.1016/j.cell.2009.02.009
Reference
  Authors
Morris DP, Greenleaf AL
  Title
The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.
  Journal
J Biol Chem 275:39935-43 (2000)
DOI:10.1074/jbc.M004118200
Reference
  Authors
Chen YI, Moore RE, Ge HY, Young MK, Lee TD, Stevens SW
  Title
Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.
  Journal
Nucleic Acids Res 35:3928-44 (2007)
DOI:10.1093/nar/gkm347
Reference
  Authors
Ritchie DB, Schellenberg MJ, MacMillan AM
  Title
Spliceosome structure: piece by piece.
  Journal
Biochim Biophys Acta 1789:624-33 (2009)
DOI:10.1016/j.bbagrm.2009.08.010
Reference
  Authors
Bertram K, Agafonov DE, Dybkov O, Haselbach D, Leelaram MN, Will CL, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation.
  Journal
Cell 170:701-713.e11 (2017)
DOI:10.1016/j.cell.2017.07.011
Reference
  Authors
Zhang X, Yan C, Zhan X, Li L, Lei J, Shi Y
  Title
Structure of the human activated spliceosome in three conformational states.
  Journal
Cell Res 28:307-322 (2018)
DOI:10.1038/cr.2018.14
Reference
  Authors
Haselbach D, Komarov I, Agafonov DE, Hartmuth K, Graf B, Dybkov O, Urlaub H, Kastner B, Luhrmann R, Stark H
  Title
Structure and Conformational Dynamics of the Human Spliceosomal B(act) Complex.
  Journal
Cell 172:454-464.e11 (2018)
DOI:10.1016/j.cell.2018.01.010
Reference
  Authors
Zhan X, Lu Y, Shi Y
  Title
Molecular basis for the activation of human spliceosome.
  Journal
Nat Commun 15:6348 (2024)
DOI:10.1038/s41467-024-50785-0
KO pathway
ko03040   

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