KEGG   PATHWAY: bit00270
Entry
bit00270                    Pathway                                
Name
Cysteine and methionine metabolism - Bacillus spizizenii
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
bit00270  Cysteine and methionine metabolism
bit00270

Module
bit_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:bit00270]
bit_M00021  Cysteine biosynthesis, serine => cysteine [PATH:bit00270]
bit_M00034  Methionine salvage pathway [PATH:bit00270]
bit_M00609  Cysteine biosynthesis, methionine => cysteine [PATH:bit00270]
Other DBs
GO: 0006534 0006555
Organism
Bacillus spizizenii [GN:bit]
Gene
BIS30_10915  serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
BIS30_10790  cysteine synthase [KO:K01738] [EC:2.5.1.47]
BIS30_04365  cysteine synthase [KO:K01738] [EC:2.5.1.47]
BIS30_03010  cystathionine gamma-synthase [KO:K17217] [EC:4.4.1.1 4.4.1.2]
BIS30_16655  cystathionine gamma-synthase [KO:K01760] [EC:4.4.1.13]
BIS30_05270  cystathionine beta-lyase [KO:K14155] [EC:4.4.1.13]
BIS30_03015  cysteine synthase [KO:K17216] [EC:2.5.1.134]
BIS30_11740  mmuM; homocysteine methyltransferase [KO:K00547] [EC:2.1.1.10]
BIS30_16215  homocysteine methyltransferase [KO:K24042] [EC:2.1.1.13 1.5.1.54]
BIS30_17375  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
BIS30_04655  S-adenosylmethionine synthetase [KO:K00789] [EC:2.5.1.6]
BIS30_03935  S-adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
BIS30_08470  spermidine synthase [KO:K00797] [EC:2.5.1.16]
BIS30_03020  5'-methylthioadenosine nucleosidase [KO:K01243] [EC:3.2.2.9]
BIS30_17580  mtnK; methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
BIS30_18525  laccase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
BIS30_17575  mtnA; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
BIS30_17605  mtnB; methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
BIS30_17595  mtnW; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase [KO:K08965] [EC:5.3.2.5]
BIS30_17600  mtnX; 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase [KO:K08966] [EC:3.1.3.87]
BIS30_17610  acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
BIS30_17590  aminotransferase [KO:K08969] [EC:2.6.1.117]
BIS30_04200  histidine kinase [KO:K08968] [EC:1.8.4.14]
BIS30_20265  Type II C5 methyltransferase M.BisORFDP [KO:K00558] [EC:2.1.1.37]
BIS30_09930  Type II C5 methyltransferase M.BisIII [KO:K00558] [EC:2.1.1.37]
BIS30_03025  SAM-dependent methyltransferase [KO:K17462] [EC:2.1.1.-]
BIS30_04725  S-ribosylhomocysteinase [KO:K07173] [EC:4.4.1.21]
BIS30_19240  aspartate kinase [KO:K00928] [EC:2.7.2.4]
BIS30_12475  aspartate kinase [KO:K00928] [EC:2.7.2.4]
BIS30_03655  aspartate kinase [KO:K00928] [EC:2.7.2.4]
BIS30_19235  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
BIS30_05690  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
BIS30_00585  homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
BIS30_16650  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
BIS30_11730  branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
BIS30_09055  branched-chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
BIS30_05085  cysteine dioxygenase [KO:K00456] [EC:1.13.11.20]
BIS30_00830  aspartate aminotransferase [KO:K00812] [EC:2.6.1.1]
BIS30_15485  aspartate aminotransferase [KO:K11358] [EC:2.6.1.1]
BIS30_12070  lactate dehydrogenase [KO:K00016] [EC:1.1.1.27]
BIS30_06885  amino acid racemase [KO:K25316] [EC:5.1.1.10]
BIS30_03995  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BIS30_18770  serine dehydratase [KO:K01752] [EC:4.3.1.17]
BIS30_18775  serine dehydratase [KO:K01752] [EC:4.3.1.17]
BIS30_01195  D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
BIS30_15715  MFS transporter [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
bit00010  Glycolysis / Gluconeogenesis
bit00250  Alanine, aspartate and glutamate metabolism
bit00260  Glycine, serine and threonine metabolism
bit00290  Valine, leucine and isoleucine biosynthesis
bit00430  Taurine and hypotaurine metabolism
bit00480  Glutathione metabolism
bit00620  Pyruvate metabolism
bit00640  Propanoate metabolism
bit00770  Pantothenate and CoA biosynthesis
bit00900  Terpenoid backbone biosynthesis
bit00920  Sulfur metabolism
KO pathway
ko00270   
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