PATHWAY: bxb00470
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Entry
bxb00470 Pathway
Name
D-Amino acid metabolism - Paraburkholderia xenovorans LB400
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
bxb00470
D-Amino acid metabolism
Ortholog table
Module
bxb_M00948
Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:
bxb00470
]
Other DBs
GO:
0046416
Organism
Paraburkholderia xenovorans LB400 [GN:
bxb
]
Gene
DR64_3825
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
DR64_5713
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
DR64_1894
aminotransferase class IV family protein [KO:
K00824
] [EC:
2.6.1.21
]
DR64_2664
D-alanine--D-alanine ligase family protein [KO:
K01921
] [EC:
6.3.2.4
]
DR64_3691
aspartate racemase family protein [KO:
K25316
] [EC:
5.1.1.10
]
DR64_6445
glsA; glutaminase A [KO:
K01425
] [EC:
3.5.1.2
]
DR64_4819
FAD dependent oxidoreductase family protein [KO:
K05597
] [EC:
3.5.1.38
]
DR64_828
murI; glutamate racemase [KO:
K01776
] [EC:
5.1.1.3
]
DR64_2660
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase [KO:
K01925
] [EC:
6.3.2.9
]
DR64_8759
hypothetical protein [KO:
K19802
] [EC:
5.1.1.20
5.1.1.25
]
DR64_680
aspartate racemase family protein [KO:
K01779
] [EC:
5.1.1.13
]
DR64_1737
putative D-serine deaminase (D-serine dehydratase) protein [KO:
K01753
] [EC:
4.3.1.18
]
DR64_2050
dapF; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
DR64_2521
lysA; diaminopimelate decarboxylase [KO:
K01586
] [EC:
4.1.1.20
]
DR64_8022
hypothetical protein [KO:
K01586
] [EC:
4.1.1.20
]
DR64_6345
proline racemase [KO:
K01777
] [EC:
5.1.1.4
]
DR64_6195
4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
DR64_6722
prpA; 4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
DR64_6198
FAD dependent oxidoreductase family protein [KO:
K22549
] [EC:1.5.99.-]
DR64_6196
FAD dependent oxidoreductase family protein [KO:
K21061
] [EC:1.5.99.-]
DR64_6197
2Fe-2S iron-sulfur cluster binding domain protein [KO:
K22550
]
DR64_5041
2Fe-2S iron-sulfur cluster binding domain protein [KO:
K22550
]
DR64_6194
dihydrodipicolinate synthetase family protein [KO:
K21062
] [EC:
3.5.4.22
]
DR64_7111
aldehyde dehydrogenase family protein [KO:
K13877
] [EC:
1.2.1.26
]
DR64_6655
ketopantoate reductase PanE/ApbA family protein [KO:
K00285
] [EC:
1.4.5.1
]
DR64_2539
FAD binding domain protein [KO:
K00285
] [EC:
1.4.5.1
]
DR64_3162
ketopantoate reductase PanE/ApbA family protein [KO:
K00285
] [EC:
1.4.5.1
]
DR64_8038
ketopantoate reductase PanE/ApbA family protein [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
bxb00010
Glycolysis / Gluconeogenesis
bxb00020
Citrate cycle (TCA cycle)
bxb00250
Alanine, aspartate and glutamate metabolism
bxb00260
Glycine, serine and threonine metabolism
bxb00270
Cysteine and methionine metabolism
bxb00300
Lysine biosynthesis
bxb00310
Lysine degradation
bxb00330
Arginine and proline metabolism
bxb00340
Histidine metabolism
bxb00360
Phenylalanine metabolism
bxb00550
Peptidoglycan biosynthesis
bxb00620
Pyruvate metabolism
KO pathway
ko00470
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