KEGG   PATHWAY: hgl00270
Entry
hgl00270                    Pathway                                
Name
Cysteine and methionine metabolism - Heterocephalus glaber (naked mole-rat)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
hgl00270  Cysteine and methionine metabolism
hgl00270

Module
hgl_M00034  Methionine salvage pathway [PATH:hgl00270]
hgl_M00035  Methionine degradation [PATH:hgl00270]
hgl_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:hgl00270]
Other DBs
GO: 0006534 0006555
Organism
Heterocephalus glaber (naked mole-rat) [GN:hgl]
Gene
101718068  Cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
101701445  Kyat3; kynurenine aminotransferase 3 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
101714047  Ccbl1; kynurenine--oxoglutarate transaminase 1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
101703797  Cbs; cystathionine-beta-synthase [KO:K01697] [EC:4.2.1.22]
101723121  Bhmt; betaine--homocysteine S-methyltransferase [KO:K00544] [EC:2.1.1.5]
101720782  Bhmt2; betaine--homocysteine S-methyltransferase 2 [KO:K00547] [EC:2.1.1.10]
101720687  Mtr; 5-methyltetrahydrofolate-homocysteine methyltransferase [KO:K00548] [EC:2.1.1.13]
101724236  Mat2b; methionine adenosyltransferase 2B [KO:K00789] [EC:2.5.1.6]
101703803  Mat2a; methionine adenosyltransferase 2A [KO:K00789] [EC:2.5.1.6]
101714973  Mat1a; methionine adenosyltransferase 1A [KO:K00789] [EC:2.5.1.6]
101713051  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
101710238  Amd1; adenosylmethionine decarboxylase 1 [KO:K01611] [EC:4.1.1.50]
101707712  S-adenosylmethionine decarboxylase proenzyme 1 [KO:K01611] [EC:4.1.1.50]
101711473  S-adenosylmethionine decarboxylase proenzyme 1 [KO:K01611] [EC:4.1.1.50]
101700675  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
101713365  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
101696345  Srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
101718865  spermine synthase [KO:K00802] [EC:2.5.1.22]
101696715  Sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
101700706  Mtap; methylthioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
101722043  Lacc1; laccase domain containing 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
101697881  Mri1; methylthioribose-1-phosphate isomerase 1 [KO:K08963] [EC:5.3.1.23]
101704355  Apip; APAF1 interacting protein [KO:K08964] [EC:4.2.1.109]
101721469  Enoph1; enolase-phosphatase 1 [KO:K09880] [EC:3.1.3.77]
101715211  Adi1; acireductone dioxygenase 1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
101698939  Tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
101710424  Il4i1; interleukin 4 induced 1 [KO:K03334] [EC:1.4.3.2]
101697457  Gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
101712352  Dnmt1; DNA methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
101718745  Dnmt3a; DNA methyltransferase 3 alpha [KO:K17398] [EC:2.1.1.37]
101725788  Dnmt3b; DNA methyltransferase 3 beta [KO:K17399] [EC:2.1.1.37]
101714508  putative adenosylhomocysteinase 2 [KO:K01251] [EC:3.13.2.1]
101707881  Ahcyl2; adenosylhomocysteinase like 2 [KO:K01251] [EC:3.13.2.1]
101710960  Ahcyl1; adenosylhomocysteinase like 1 [KO:K01251] [EC:3.13.2.1]
101712599  Ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
101720534  Bcat1; branched chain amino acid transaminase 1 [KO:K00826] [EC:2.6.1.42]
101716132  Bcat2; branched chain amino acid transaminase 2 [KO:K00826] [EC:2.6.1.42]
101714498  Agxt2; alanine--glyoxylate aminotransferase 2 [KO:K00827] [EC:2.6.1.44 2.6.1.40]
101718793  Gclc; glutamate-cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
101703324  Gclm; glutamate-cysteine ligase modifier subunit [KO:K11205]
101704674  Gss; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
101721993  Cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
101713030  Got1; glutamic-oxaloacetic transaminase 1 [KO:K14454] [EC:2.6.1.1]
101721522  Got1l1; glutamic-oxaloacetic transaminase 1-like 1 [KO:K14454] [EC:2.6.1.1]
101712695  Got2; glutamic-oxaloacetic transaminase 2 [KO:K14455] [EC:2.6.1.1]
101697451  Mpst; mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
101698078  Tst; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
101699088  Ldhb; lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
101715364  Ldha; lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
101715932  Ldhc; lactate dehydrogenase C [KO:K00016] [EC:1.1.1.27]
101703298  Ldhal6b; lactate dehydrogenase A like 6B [KO:K00016] [EC:1.1.1.27]
101724420  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
101719728  Mdh1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
101713764  Mdh2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
101722640  Sds; serine dehydratase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
101723200  Sdsl; serine dehydratase like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
101712402  Phgdh; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
101718076  Psat1; phosphoserine aminotransferase 1 [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
hgl00010  Glycolysis / Gluconeogenesis
hgl00250  Alanine, aspartate and glutamate metabolism
hgl00260  Glycine, serine and threonine metabolism
hgl00290  Valine, leucine and isoleucine biosynthesis
hgl00430  Taurine and hypotaurine metabolism
hgl00480  Glutathione metabolism
hgl00620  Pyruvate metabolism
hgl00640  Propanoate metabolism
hgl00770  Pantothenate and CoA biosynthesis
hgl00900  Terpenoid backbone biosynthesis
hgl00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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