KEGG   PATHWAY: mum00970
Entry
mum00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Pseudoduganella umbonata
Class
Genetic Information Processing; Translation
Pathway map
mum00970  Aminoacyl-tRNA biosynthesis
mum00970

Organism
Pseudoduganella umbonata [GN:mum]
Gene
FCL38_00125  [KO:K14219]
FCL38_00210  [KO:K14228]
FCL38_00215  [KO:K14228]
FCL38_00225  [KO:K14228]
FCL38_00235  [KO:K14228]
FCL38_00325  [KO:K01883] [EC:6.1.1.16]
FCL38_00350  [KO:K14233]
FCL38_01990  [KO:K14227]
FCL38_01995  [KO:K14218]
FCL38_02620  [KO:K14219]
FCL38_02625  [KO:K14219]
FCL38_02630  [KO:K14219]
FCL38_02635  [KO:K14219]
FCL38_02945  trpS; tryptophan--tRNA ligase [KO:K01867] [EC:6.1.1.2]
FCL38_03275  [KO:K14238]
FCL38_03285  [KO:K01042] [EC:2.9.1.1]
FCL38_04065  [KO:K14228]
FCL38_04495  lysS; lysine--tRNA ligase [KO:K04567] [EC:6.1.1.6]
FCL38_05225  [KO:K14237]
FCL38_06455  [KO:K14221]
FCL38_06460  [KO:K14221]
FCL38_06465  [KO:K14237]
FCL38_06495  [KO:K14228]
FCL38_09000  [KO:K01890] [EC:6.1.1.20]
FCL38_09005  pheS; phenylalanine--tRNA ligase subunit alpha [KO:K01889] [EC:6.1.1.20]
FCL38_09025  thrS; threonine--tRNA ligase [KO:K01868] [EC:6.1.1.3]
FCL38_09030  [KO:K14237]
FCL38_09035  [KO:K14237]
FCL38_09740  [KO:K14225]
FCL38_10690  [KO:K14225]
FCL38_10695  [KO:K14225]
FCL38_11030  [KO:K14222]
FCL38_11035  [KO:K14225]
FCL38_11040  [KO:K14225]
FCL38_11045  [KO:K14225]
FCL38_11300  [KO:K14230]
FCL38_11345  [KO:K14224]
FCL38_11350  [KO:K14224]
FCL38_11385  [KO:K14224]
FCL38_11390  [KO:K14218]
FCL38_11395  [KO:K14224]
FCL38_11400  [KO:K14218]
FCL38_11405  [KO:K14224]
FCL38_11410  [KO:K14218]
FCL38_11415  [KO:K01885] [EC:6.1.1.17]
FCL38_11440  metG; methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
FCL38_12135  [KO:K14228]
FCL38_12450  [KO:K14220]
FCL38_12460  [KO:K14220]
FCL38_12485  [KO:K14220]
FCL38_12565  hisS; histidine--tRNA ligase [KO:K01892] [EC:6.1.1.21]
FCL38_12910  [KO:K14232]
FCL38_14415  ileS; isoleucine--tRNA ligase [KO:K01870] [EC:6.1.1.5]
FCL38_14470  [KO:K14230]
FCL38_14670  [KO:K14229]
FCL38_15380  [KO:K14234]
FCL38_15800  [KO:K14230]
FCL38_15995  [KO:K14230]
FCL38_16000  [KO:K14230]
FCL38_16160  glyQ; glycine--tRNA ligase subunit alpha [KO:K01878] [EC:6.1.1.14]
FCL38_16165  [KO:K01879] [EC:6.1.1.14]
FCL38_16510  [KO:K01881] [EC:6.1.1.15]
FCL38_17090  [KO:K14228]
FCL38_17945  [KO:K14225]
FCL38_18045  [KO:K01869] [EC:6.1.1.4]
FCL38_18710  [KO:K14218]
FCL38_18715  [KO:K14227]
FCL38_18755  [KO:K14218]
FCL38_18760  [KO:K14227]
FCL38_19560  [KO:K14237]
FCL38_19565  [KO:K14221]
FCL38_19570  [KO:K14221]
FCL38_20155  [KO:K14232]
FCL38_20835  [KO:K02433] [EC:6.3.5.6 6.3.5.7]
FCL38_21195  [KO:K14234]
FCL38_21540  [KO:K14219]
FCL38_22010  [KO:K14234]
FCL38_22340  [KO:K14236]
FCL38_22345  [KO:K14225]
FCL38_22350  [KO:K14234]
FCL38_22360  [KO:K14235]
FCL38_22940  [KO:K14223]
FCL38_23190  aspS; aspartate--tRNA ligase [KO:K01876] [EC:6.1.1.12]
FCL38_23940  [KO:K14231]
FCL38_24215  [KO:K14231]
FCL38_24325  [KO:K14227]
FCL38_24330  [KO:K14218]
FCL38_24360  [KO:K14227]
FCL38_24365  [KO:K14218]
FCL38_24485  [KO:K14227]
FCL38_24490  [KO:K14218]
FCL38_24730  gatB; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB [KO:K02434] [EC:6.3.5.6 6.3.5.7]
FCL38_24735  gatA; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA [KO:K02433] [EC:6.3.5.6 6.3.5.7]
FCL38_24740  gatC; Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC [KO:K02435] [EC:6.3.5.6 6.3.5.7]
FCL38_24805  [KO:K01887] [EC:6.1.1.19]
FCL38_24870  [KO:K00604] [EC:2.1.2.9]
FCL38_24995  [KO:K01866] [EC:6.1.1.1]
FCL38_25065  [KO:K01873] [EC:6.1.1.9]
FCL38_26180  [KO:K14232]
FCL38_26705  [KO:K14226]
FCL38_26735  [KO:K14233]
FCL38_26950  [KO:K14227]
FCL38_26955  [KO:K14218]
FCL38_27240  [KO:K01886] [EC:6.1.1.18]
FCL38_27285  alaS; alanine--tRNA ligase [KO:K01872] [EC:6.1.1.7]
FCL38_27615  [KO:K14226]
FCL38_28115  [KO:K14219]
FCL38_28560  [KO:K14227]
FCL38_28565  [KO:K14218]
FCL38_28600  [KO:K14227]
FCL38_28605  [KO:K14218]
FCL38_28925  [KO:K14229]
FCL38_28930  [KO:K14229]
FCL38_28935  [KO:K14229]
FCL38_29160  [KO:K14233]
FCL38_30210  serS; serine--tRNA ligase [KO:K01875] [EC:6.1.1.11]
FCL38_30215  [KO:K14233]
FCL38_30220  [KO:K14233]
FCL38_30435  [KO:K14237]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
mum00250  Alanine, aspartate and glutamate metabolism
mum00260  Glycine, serine and threonine metabolism
mum00270  Cysteine and methionine metabolism
mum00290  Valine, leucine and isoleucine biosynthesis
mum00300  Lysine biosynthesis
mum00330  Arginine and proline metabolism
mum00340  Histidine metabolism
mum00380  Tryptophan metabolism
mum00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

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