KEGG   PATHWAY: npd04146
Entry
npd04146                    Pathway                                
Name
Peroxisome - Nothoprocta perdicaria (Chilean tinamou)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
npd04146  Peroxisome
npd04146

Other DBs
GO: 0005777
Organism
Nothoprocta perdicaria (Chilean tinamou) [GN:npd]
Gene
112942333  FAR2; fatty acyl-CoA reductase 2 isoform X1 [KO:K13356] [EC:1.2.1.84]
112942375  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
112942595  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
112942605  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
112943036  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 isoform X1 [KO:K00232] [EC:1.3.3.6]
112943151  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
112943474  CAT; catalase [KO:K03781] [EC:1.11.1.6]
112943849  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
112943963  MPV17L2; mpv17-like protein 2 isoform X1 [KO:K13348]
112944555  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
112944791  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
112944899  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
112944925  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
112944980  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
112945184  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
112945192  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
112945427  PEX12; peroxisome assembly protein 12 [KO:K13345]
112945569  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
112945733  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
112946210  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
112946387  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
112946477  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
112946774  EHHADH; peroxisomal bifunctional enzyme isoform X1 [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
112947167  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
112947349  PEX1; peroxisome biogenesis factor 1 [KO:K13338]
112947352  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
112947604  ECI2; enoyl-CoA delta isomerase 2, mitochondrial isoform X1 [KO:K13239] [EC:5.3.3.8]
112947903  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
112948356  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
112948426  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X1 [KO:K00308] [EC:1.5.3.13]
112948465  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
112948822  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
112949124  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
112949351  PEX6; peroxisome biogenesis factor 6 [KO:K13339]
112949527  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
112949745  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
112949828  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
112949924  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
112950024  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
112950775  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
112951391  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 [KO:K03426] [EC:3.6.1.22]
112951715  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
112951938  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
112952145  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
112952216  NUDT13; nucleoside diphosphate-linked moiety X motif 13 [KO:K03426] [EC:3.6.1.22]
112952514  PEX5L; PEX5-related protein isoform X1 [KO:K13342]
112952722  [KO:K00659] [EC:2.3.1.65 3.1.2.2]
112952874  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
112952892  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
112953087  ACSL6; long-chain-fatty-acid--CoA ligase 6 [KO:K01897] [EC:6.2.1.3]
112953354  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
112953567  PEX11B; peroxisomal membrane protein 11B [KO:K13352]
112953578  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
112953659  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
112954567  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
112954632  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
112954668  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
112954835  XDH; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
112954946  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
112955214  PMVK; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
112955670  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
112955961  CRAT; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
112956630  [KO:K08746] [EC:6.2.1.- 6.2.1.3]
112956990  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
112957212  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
112957467  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
112957966  ABCD4; ATP-binding cassette sub-family D member 4 isoform X1 [KO:K05678] [EC:7.6.2.8]
112958088  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
112958235  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
112958324  PEX26; peroxisome assembly protein 26 [KO:K13340]
112958598  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
112958912  HSD17B4; peroxisomal multifunctional enzyme type 2 isoform X1 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
112958971  HAO1; hydroxyacid oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
112959355  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
112959623  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
112959847  MPV17L; mpv17-like protein [KO:K13349]
112959880  SCP2; non-specific lipid-transfer protein [KO:K08764] [EC:2.3.1.176]
112960084  HAO2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
npd00071  Fatty acid degradation
npd00120  Primary bile acid biosynthesis
npd00230  Purine metabolism
npd00564  Glycerophospholipid metabolism
npd00565  Ether lipid metabolism
npd00830  Retinol metabolism
npd00900  Terpenoid backbone biosynthesis
npd03320  PPAR signaling pathway
KO pathway
ko04146   

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