KEGG   PATHWAY: osa04145
Entry
osa04145                    Pathway                                
Name
Phagosome - Oryza sativa japonica (Japanese rice)
Description
Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
Class
Cellular Processes; Transport and catabolism
Pathway map
osa04145  Phagosome
osa04145

Other DBs
GO: 0045335
Organism
Oryza sativa japonica (Japanese rice) [GN:osa]
Gene
107276128  [KO:K10956]
112937349  [KO:K10956]
4324550  [KO:K02155]
4325879  OsRac1; rac-like GTP-binding protein 1 [KO:K04392]
4325946  [KO:K07897]
4326699  [KO:K02150]
4326917  OSTB-34; tubulin beta-1 chain [KO:K07375]
4327166  [KO:K02150]
4327180  [KO:K07897]
4327412  [KO:K02154]
4327550  OSTB-16; tubulin beta-4 chain [KO:K07375]
4327660  OsJ_02396; probable V-type proton ATPase subunit D [KO:K02146]
4327731  [KO:K03661]
4327833  [KO:K02147]
4327929  [KO:K09481]
4328116  OsJ_05161; rac-like GTP-binding protein 6 [KO:K04392]
4328420  OsJ_05524; tubulin beta-5 chain [KO:K07375]
4328470  [KO:K02145] [EC:7.1.2.2]
4328492  OsJ_05608; protein transport protein Sec61 subunit gamma [KO:K07342]
4329132  OsJ_06426; rac-like GTP-binding protein 7 [KO:K04392]
4329623  [KO:K02155]
4330693  OsJ_08342; rac-like GTP-binding protein 3 [KO:K04392]
4331207  [KO:K02151]
4331272  OsJ_09018; rac-like GTP-binding protein 5 [KO:K04392]
4331315  TUB2; tubulin beta-2 chain [KO:K07375]
4331646  [KO:K07887]
4332042  [KO:K10956]
4332083  [KO:K07374]
4332270  [KO:K02154]
4333051  [KO:K00921] [EC:2.7.1.150]
4333632  OsTUB8; tubulin beta-8 chain [KO:K07375]
4333662  [KO:K07887]
4333966  [KO:K07374]
4334309  pTUB22; tubulin beta-7 chain [KO:K07375]
4334384  [KO:K08517]
4334509  [KO:K08057]
4334675  [KO:K08057]
4335014  [KO:K02151]
4335732  [KO:K08054]
4336482  [KO:K08492]
4336883  [KO:K02152]
4337176  [KO:K02149]
4337284  [KO:K02153]
4337509  [KO:K00921] [EC:2.7.1.150]
4337563  [KO:K02155]
4337982  [KO:K00914] [EC:2.7.1.137]
4338790  OsTUB6; tubulin beta-6 chain [KO:K07375]
4339122  [KO:K02150]
4339262  [KO:K08057]
4339304  OsJ_19185; rac-like GTP-binding protein 2 [KO:K04392]
4339322  [KO:K07897]
4339450  [KO:K07897]
4339800  [KO:K02148]
4340590  OsJ_20720; rac-like GTP-binding protein 4 isoform 1 [KO:K04392]
4340685  [KO:K00921] [EC:2.7.1.150]
4341339  [KO:K02147]
4341707  [KO:K07342]
4341751  [KO:K02145] [EC:7.1.2.2]
4341810  OsJ_22330; tubulin beta-3 chain [KO:K07375]
4342826  CRO1; calreticulin precursor [KO:K08057]
4343694  tubA; tubulin alpha-1 chain [KO:K07374]
4344440  [KO:K00921] [EC:2.7.1.150]
4345097  CpSecY; preprotein translocase subunit SECY, chloroplastic [KO:K10956]
4345232  [KO:K00914] [EC:2.7.1.137]
4345628  [KO:K00921] [EC:2.7.1.150]
4345725  [KO:K00921] [EC:2.7.1.150]
4346809  [KO:K10956]
4346811  [KO:K10956]
4347005  [KO:K00921] [EC:2.7.1.150]
4347548  [KO:K10956]
4348218  [KO:K02154]
4348725  [KO:K07887]
4349890  VATP-P1; V-type proton ATPase 16 kDa proteolipid subunit [KO:K02155]
4350197  TID1; tubulin alpha-2 chain [KO:K07374]
4351534  [KO:K08492]
4351612  [KO:K02155]
4352862  GLUP4; ras-related protein Rab5A [KO:K07887]
9266625  [KO:K09481]
9267167  [KO:K08057]
9269540  [KO:K09481]
9269751  [KO:K00921] [EC:2.7.1.150]
9270655  [KO:K08517]
9271327  [KO:K08517]
9271333  [KO:K09481]
9272111  [KO:K02144]
Compound
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Stuart LM, Ezekowitz RA
  Title
Phagocytosis: elegant complexity.
  Journal
Immunity 22:539-50 (2005)
DOI:10.1016/j.immuni.2005.05.002
Reference
  Authors
Tjelle TE, Lovdal T, Berg T
  Title
Phagosome dynamics and function.
  Journal
Reference
  Authors
Dupuy AG, Caron E
  Title
Integrin-dependent phagocytosis: spreading from microadhesion to new concepts.
  Journal
J Cell Sci 121:1773-83 (2008)
DOI:10.1242/jcs.018036
Reference
  Authors
Brumell JH, Grinstein S
  Title
Salmonella redirects phagosomal maturation.
  Journal
Curr Opin Microbiol 7:78-84 (2004)
DOI:10.1016/j.mib.2003.12.005
Reference
  Authors
Huynh KK, Eskelinen EL, Scott CC, Malevanets A, Saftig P, Grinstein S
  Title
LAMP proteins are required for fusion of lysosomes with phagosomes.
  Journal
EMBO J 26:313-24 (2007)
DOI:10.1038/sj.emboj.7601511
Reference
  Authors
Luzio JP, Pryor PR, Bright NA
  Title
Lysosomes: fusion and function.
  Journal
Nat Rev Mol Cell Biol 8:622-32 (2007)
DOI:10.1038/nrm2217
Reference
  Authors
Sumimoto H
  Title
Structure, regulation and evolution of Nox-family NADPH oxidases that produce reactive oxygen species.
  Journal
FEBS J 275:3249-77 (2008)
DOI:10.1111/j.1742-4658.2008.06488.x
Related
pathway
osa04142  Lysosome
osa04144  Endocytosis
osa04620  Toll-like receptor signaling pathway
KO pathway
ko04145   

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