KEGG   PATHWAY: atr00270
Entry
atr00270                    Pathway                                
Name
Cysteine and methionine metabolism - Amborella trichopoda
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
atr00270  Cysteine and methionine metabolism
atr00270

Module
atr_M00021  Cysteine biosynthesis, serine => cysteine [PATH:atr00270]
atr_M00034  Methionine salvage pathway [PATH:atr00270]
atr_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:atr00270]
Other DBs
GO: 0006534 0006555
Organism
Amborella trichopoda [GN:atr]
Gene
18424083  serine acetyltransferase 2 isoform X1 [KO:K00640] [EC:2.3.1.30]
18427169  probable serine acetyltransferase 1 [KO:K00640] [EC:2.3.1.30]
18438730  serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
18421423  cysteine synthase [KO:K01738] [EC:2.5.1.47]
18448662  cysteine synthase [KO:K01738] [EC:2.5.1.47]
18446109  cysteine synthase 2 isoform X2 [KO:K01738] [EC:2.5.1.47]
18421424  cysteine synthase [KO:K01738] [EC:2.5.1.47]
18422839  bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial isoform X1 [KO:K13034] [EC:2.5.1.47 4.4.1.9]
18449024  cystathionine beta-lyase, chloroplastic isoform X1 [KO:K01760] [EC:4.4.1.13]
18429653  homocysteine S-methyltransferase 2 [KO:K00547] [EC:2.1.1.10]
18995764  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
18421537  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 1 [KO:K00549] [EC:2.1.1.14]
18431955  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase isoform X2 [KO:K00549] [EC:2.1.1.14]
18430082  S-adenosylmethionine synthase 2 [KO:K00789] [EC:2.5.1.6]
18445115  S-adenosylmethionine synthase 3 [KO:K00789] [EC:2.5.1.6]
18435332  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
18440649  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
18422718  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
18434106  spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
18434105  spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
18447476  spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
18440320  spermine synthase isoform X1 [KO:K00797] [EC:2.5.1.16]
18430237  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
18434693  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
18428323  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 [KO:K01244] [EC:3.2.2.16]
18427002  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 [KO:K01244] [EC:3.2.2.16]
18437001  methylthioribose kinase isoform X1 [KO:K00899] [EC:2.7.1.100]
18437010  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
18432551  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
18448898  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 isoform X1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
18429601  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
18429602  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
18435834  uncharacterized protein LOC18435834 [KO:K23977] [EC:2.6.1.117]
18425344  probable aminotransferase TAT2 isoform X2 [KO:K00815] [EC:2.6.1.5]
18425815  uncharacterized protein LOC18425815 isoform X1 [KO:K00837] [EC:2.6.1.-]
18438907  methionine gamma-lyase isoform X1 [KO:K01761] [EC:4.4.1.11]
18436927  DNA (cytosine-5)-methyltransferase 1B [KO:K00558] [EC:2.1.1.37]
18443907  DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
18439354  DNA (cytosine-5)-methyltransferase CMT3 isoform X1 [KO:K00558] [EC:2.1.1.37]
18425397  DNA (cytosine-5)-methyltransferase 4 [KO:K00558] [EC:2.1.1.37]
18445318  uncharacterized protein LOC18445318 isoform X1 [KO:K17398] [EC:2.1.1.37]
18438268  adenosylhomocysteinase 1 [KO:K01251] [EC:3.13.2.1]
18424527  1-aminocyclopropane-1-carboxylate synthase [KO:K20772] [EC:4.4.1.14]
18428280  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
18445561  1-aminocyclopropane-1-carboxylate synthase 3 [KO:K01762] [EC:4.4.1.14]
18443752  LOW QUALITY PROTEIN: 1-aminocyclopropane-1-carboxylate synthase 7-like [KO:K01762] [EC:4.4.1.14]
18434128  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
18428159  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
18436883  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
18434408  aspartokinase 2, chloroplastic isoform X1 [KO:K00928] [EC:2.7.2.4]
18429456  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [KO:K12524] [EC:2.7.2.4 1.1.1.3]
18443291  uncharacterized protein LOC18443291 isoform X1 [KO:K00133] [EC:1.2.1.11]
18447928  cystathionine gamma-synthase 1, chloroplastic [KO:K01739] [EC:2.5.1.48]
18424263  branched-chain amino acid aminotransferase 2, chloroplastic isoform X2 [KO:K00826] [EC:2.6.1.42]
18445575  branched-chain amino acid aminotransferase 2, chloroplastic isoform X2 [KO:K00826] [EC:2.6.1.42]
18445578  branched-chain-amino-acid aminotransferase 5, chloroplastic [KO:K00826] [EC:2.6.1.42]
105421530  branched-chain amino acid aminotransferase 2, chloroplastic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
105421531  branched-chain amino acid aminotransferase 2, chloroplastic-like [KO:K00826] [EC:2.6.1.42]
18422179  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
18433551  alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial-like [KO:K00827] [EC:2.6.1.44 2.6.1.40]
18441563  glutamate--cysteine ligase, chloroplastic [KO:K01919] [EC:6.3.2.2]
18423035  glutamate--cysteine ligase, chloroplastic [KO:K01919] [EC:6.3.2.2]
18440643  glutathione synthetase, chloroplastic isoform X2 [KO:K21456] [EC:6.3.2.3]
18426621  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
18426336  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
18438519  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
18443033  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
18433408  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
18439298  putative D-cysteine desulfhydrase 1, mitochondrial [KO:K05396] [EC:4.4.1.15]
18430323  D-cysteine desulfhydrase 2, mitochondrial isoform X1 [KO:K05396] [EC:4.4.1.15]
18430133  L-cysteine desulfhydrase [KO:K22207] [EC:4.4.1.28]
18428843  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105420834  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
18422244  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18440828  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18442455  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18442196  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18425178  probable S-sulfocysteine synthase, chloroplastic isoform X1 [KO:K22846] [EC:2.5.1.144]
18444981  D-3-phosphoglycerate dehydrogenase 1, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
18435467  D-3-phosphoglycerate dehydrogenase 1, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
18428557  phosphoserine aminotransferase 1, chloroplastic [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
atr00010  Glycolysis / Gluconeogenesis
atr00250  Alanine, aspartate and glutamate metabolism
atr00260  Glycine, serine and threonine metabolism
atr00290  Valine, leucine and isoleucine biosynthesis
atr00430  Taurine and hypotaurine metabolism
atr00480  Glutathione metabolism
atr00620  Pyruvate metabolism
atr00640  Propanoate metabolism
atr00770  Pantothenate and CoA biosynthesis
atr00900  Terpenoid backbone biosynthesis
atr00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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