KEGG   PATHWAY: bbuf04146
Entry
bbuf04146                   Pathway                                
Name
Peroxisome - Bufo bufo (common toad)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
bbuf04146  Peroxisome
bbuf04146

Other DBs
GO: 0005777
Organism
Bufo bufo (common toad) [GN:bbuf]
Gene
120980204  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
120998556  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
120981752  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
120979778  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
121000622  PEX1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
120982863  PEX6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
121004708  PEX26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
121005928  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
120999113  PEX5L; PEX5-related protein [KO:K13342]
120999682  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
120998863  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
120995470  PEX12; peroxisome assembly protein 12 [KO:K13345]
120997369  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
121001945  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
120988933  PXMP2; peroxisomal membrane protein 2 [KO:K13347]
120989605  mpv17-like protein 2 [KO:K13348]
120991642  mpv17-like protein 2 isoform X1 [KO:K13348]
120997003  MPV17; protein Mpv17 [KO:K13348]
120995379  MPV17L; mpv17-like protein [KO:K13349]
121003952  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
120985927  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
120982359  PEX11B; peroxisomal membrane protein 11B [KO:K13352]
120989512  PEX11G; peroxisomal membrane protein 11C [KO:K13353]
120979016  SLC25A17; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
121002206  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
120992194  AMACR; alpha-methylacyl-CoA racemase isoform X1 [KO:K01796] [EC:5.1.99.4]
120983419  phytanoyl-CoA dioxygenase, peroxisomal-like isoform X1 [KO:K00477] [EC:1.14.11.18]
120983444  phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
120983453  phytanoyl-CoA dioxygenase, peroxisomal-like isoform X1 [KO:K00477] [EC:1.14.11.18]
120983478  phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
120990384  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
121005930  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
120979104  peroxisomal acyl-coenzyme A oxidase 2-like [KO:K10214] [EC:1.17.99.3]
120979105  peroxisomal acyl-coenzyme A oxidase 2-like [KO:K10214] [EC:1.17.99.3]
120979106  peroxisomal acyl-coenzyme A oxidase 2-like [KO:K10214] [EC:1.17.99.3]
120992600  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
120979161  SCP2; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
120992241  BAAT; bile acid-CoA:amino acid N-acyltransferase [KO:K00659] [EC:2.3.1.65 3.1.2.2]
121008572  acyl-coenzyme A amino acid N-acyltransferase 1-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
121007524  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
121002331  ACAA1; LOW QUALITY PROTEIN: 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
121008465  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
121009241  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like isoform X1 [KO:K12663] [EC:5.3.3.21]
121009242  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like [KO:K12663] [EC:5.3.3.21]
120977275  ABCD1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
120982337  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
120982286  ABCD4; lysosomal cobalamin transporter ABCD4 [KO:K05678] [EC:7.6.2.8]
120985703  very long-chain acyl-CoA synthetase-like isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
120985705  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
120985853  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
120986240  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
121004941  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
120990146  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
120997725  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
121009398  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
120977224  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
121007795  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
121001113  ECI2; enoyl-CoA delta isomerase 2 [KO:K13239] [EC:5.3.3.8]
121001794  enoyl-CoA delta isomerase 2-like [KO:K13239] [EC:5.3.3.8]
120980533  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
120992553  NUDT12; NAD-capped RNA hydrolase NUDT12 [KO:K03426] [EC:3.6.1.22]
121005292  NUDT13; NAD(P)H pyrophosphatase NUDT13, mitochondrial [KO:K03426] [EC:3.6.1.22]
120980665  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
121003199  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
120977495  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
120977933  CRAT; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
121002899  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
120980505  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
120998623  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
120998647  dihydroxyacetone phosphate acyltransferase-like isoform X1 [KO:K00649] [EC:2.3.1.42]
121007832  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1 [KO:K00803] [EC:2.5.1.26]
120980256  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
120988853  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
120994492  PMVK; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
120997693  AGXT; serine--pyruvate aminotransferase isoform X1 [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
120988861  DAO; LOW QUALITY PROTEIN: D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
120998260  DDO; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
121007694  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
120985913  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
121005653  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
121007382  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
121003238  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like isoform X1 [KO:K00308] [EC:1.5.3.13]
121003667  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
121003668  peroxisomal N(1)-acetyl-spermine/spermidine oxidase-like [KO:K00308] [EC:1.5.3.13]
120994682  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
120985579  hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform X1 [KO:K01640] [EC:4.1.3.4]
120996923  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
120998975  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
120994330  HAO2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
120981171  catalase-like [KO:K03781] [EC:1.11.1.6]
120981173  catalase [KO:K03781] [EC:1.11.1.6]
120981174  vegetative catalase-like [KO:K03781] [EC:1.11.1.6]
120981175  catalase-like [KO:K03781] [EC:1.11.1.6]
120981027  PRDX5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
120994537  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
120998683  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
120994733  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
120979440  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
120997151  EPHX2; bifunctional epoxide hydrolase 2 isoform X1 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
121005862  glutathione S-transferase kappa 1-like [KO:K13299] [EC:2.5.1.18]
121005863  glutathione S-transferase kappa 1-like [KO:K13299] [EC:2.5.1.18]
120999630  XDH; xanthine dehydrogenase/oxidase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
120989039  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
bbuf00071  Fatty acid degradation
bbuf00120  Primary bile acid biosynthesis
bbuf00230  Purine metabolism
bbuf00564  Glycerophospholipid metabolism
bbuf00565  Ether lipid metabolism
bbuf00830  Retinol metabolism
bbuf00900  Terpenoid backbone biosynthesis
bbuf03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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