KEGG   PATHWAY: cpoo04137
Entry
cpoo04137                   Pathway                                
Name
Mitophagy - animal - Crocodylus porosus (Australian saltwater crocodile)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
cpoo04137  Mitophagy - animal
cpoo04137

Other DBs
GO: 0000422
Organism
Crocodylus porosus (Australian saltwater crocodile) [GN:cpoo]
Gene
109321173  AMBRA1; activating molecule in BECN1-regulated autophagy protein 1 isoform X1 [KO:K17985]
109314514  PINK1; serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
109309671  TOMM7; mitochondrial import receptor subunit TOM7 homolog [KO:K17771]
109319972  TOMM20; mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
109319026  TOMM70; mitochondrial import receptor subunit TOM70 [KO:K17768]
109320057  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
109324188  MARCH5; E3 ubiquitin-protein ligase MARCH5 [KO:K10660] [EC:2.3.2.27]
109313783  TRAF2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
109314812  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
109314971  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
109310474  AMFR; E3 ubiquitin-protein ligase AMFR isoform X1 [KO:K10636] [EC:2.3.2.36]
109314373  MUL1; mitochondrial ubiquitin ligase activator of NFKB 1 [KO:K15688] [EC:2.3.2.27]
109310548  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
109308848  ARIH1; E3 ubiquitin-protein ligase ARIH1 isoform X1 [KO:K11968] [EC:2.3.2.31]
109308456  MFN1; mitofusin-1 isoform X1 [KO:K21356] [EC:3.6.5.-]
109314263  MFN2; mitofusin-2 isoform X1 [KO:K06030] [EC:3.6.5.-]
109314984  RHOT1; mitochondrial Rho GTPase 1 isoform X1 [KO:K07870] [EC:3.6.5.-]
109313365  RHOT2; mitochondrial Rho GTPase 2 isoform X1 [KO:K07871] [EC:3.6.5.-]
109312352  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
109319596  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
109310220  TAX1BP1; tax1-binding protein 1 isoform X1 [KO:K21347]
109310153  SQSTM1; sequestosome-1 [KO:K14381]
109318917  CALCOCO2; calcium-binding and coiled-coil domain-containing protein 2 isoform X1 [KO:K21348]
109315800  OPTN; optineurin isoform X1 [KO:K19946]
109320398  NBR1; next to BRCA1 gene 1 protein isoform X1 [KO:K17987]
109315543  TBK1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
109310771  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
109319126  gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
109310698  MAP1LC3B; microtubule-associated proteins 1A/1B light chain 3B [KO:K10435]
109324657  microtubule-associated proteins 1A/1B light chain 3C-like [KO:K10435]
109319275  MAP1LC3C; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435]
109313246  MAP1LC3A; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435]
109320383  BECN1; beclin-1 isoform X1 [KO:K08334]
109309062  USP8; ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
109315554  USP15; ubiquitin carboxyl-terminal hydrolase 15 isoform X1 [KO:K21343] [EC:3.4.19.12]
109312686  USP30; ubiquitin carboxyl-terminal hydrolase 30 [KO:K11851] [EC:3.4.19.12]
109313074  BCL2L1; bcl-2-like protein 1 [KO:K04570]
109312757  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1 [KO:K15637] [EC:3.1.3.16]
109310323  casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
109310392  casein kinase II subunit alpha-like isoform X1 [KO:K03097] [EC:2.7.11.1]
109313065  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
109313187  SRC; proto-oncogene tyrosine-protein kinase Src isoform X1 [KO:K05704] [EC:2.7.10.2]
109312997  ULK1; serine/threonine-protein kinase ULK1 [KO:K21357] [EC:2.7.11.1]
109305894  FUNDC1; FUN14 domain-containing protein 1 isoform X1 [KO:K17986]
109324128  BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
109324542  BNIP3L; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [KO:K15465]
109316447  BCL2L13; bcl-2-like protein 13 [KO:K15485]
109312350  FKBP8; peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
109316347  SAMM50; sorting and assembly machinery component 50 homolog [KO:K07277]
109319377  PHB2; prohibitin-2 isoform X1 [KO:K17081]
109318061  NLRX1; NLR family member X1 [KO:K12653]
109307993  MTX3; metaxin-3 isoform X1 [KO:K17776]
109322950  MTX2; metaxin-2 isoform X1 [KO:K17776]
109324700  MTX1; metaxin-1 [KO:K17776]
109321022  EIF2S1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
109316697  ATF4; cyclic AMP-dependent transcription factor ATF-4 [KO:K04374]
109322061  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
109310131  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
109323949  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
109307535  JUN; transcription factor AP-1 [KO:K04448]
109318199  HRAS; GTPase HRas isoform X1 [KO:K02833]
109320833  GTPase HRas-like [KO:K07827]
109316381  KRAS; GTPase KRas isoform X1 [KO:K07827]
109317850  NRAS; GTPase NRas [KO:K07828]
109322868  MRAS; ras-related protein M-Ras [KO:K07831]
109321502  RRAS2; ras-related protein R-Ras2 [KO:K07830]
109313227  E2F1; transcription factor E2F1 [KO:K17454]
109320697  HIF1A; hypoxia-inducible factor 1-alpha isoform X1 [KO:K08268]
109323220  SP1; transcription factor Sp1 [KO:K04684]
109312139  FOXO3; forkhead box protein O3 [KO:K09408]
109320172  CITED2; cbp/p300-interacting transactivator 2 [KO:K21361]
109311178  MITF; microphthalmia-associated transcription factor isoform X1 [KO:K09455]
109317782  TFEB; transcription factor EB [KO:K15590]
109317783  transcription factor EB-like [KO:K15590]
109317065  RABGEF1; rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
109310618  RAB5A; ras-related protein Rab-5A [KO:K07887]
109320361  RAB5C; ras-related protein Rab-5C [KO:K07889]
109318333  MON1A; vacuolar fusion protein MON1 homolog A [KO:K20195]
109314767  CCZ1; vacuolar fusion protein CCZ1 homolog [KO:K27045]
109311285  RAB7A; ras-related protein Rab-7a [KO:K07897]
109317725  RAB7B; ras-related protein Rab-7b isoform X1 [KO:K07898]
109315486  TBC1D15; TBC1 domain family member 15 isoform X1 [KO:K20168]
109308562  OPA1; dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
109307796  VCP; transitional endoplasmic reticulum ATPase [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
cpoo04140  Autophagy - animal
cpoo04210  Apoptosis
KO pathway
ko04137   
LinkDB

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