KEGG   PATHWAY: egu00900
Entry
egu00900                    Pathway                                
Name
Terpenoid backbone biosynthesis - Elaeis guineensis (African oil palm)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
egu00900  Terpenoid backbone biosynthesis
egu00900

Module
egu_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:egu00900]
egu_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:egu00900]
egu_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:egu00900]
Other DBs
GO: 0009240 0016091
Organism
Elaeis guineensis (African oil palm) [GN:egu]
Gene
105057845  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
105035100  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
105040207  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
105053930  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
105036717  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
105058728  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
105034194  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic isoform X1 [KO:K00991] [EC:2.7.7.60]
105052446  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic-like isoform X2 [KO:K00919] [EC:2.7.1.148]
105045599  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic [KO:K00919] [EC:2.7.1.148]
105043318  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
105054207  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic isoform X1 [KO:K01770] [EC:4.6.1.12]
105033410  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
105035427  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic isoform X1 [KO:K03527] [EC:1.17.7.4]
105060540  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
105056313  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
105034095  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
105059342  hydroxymethylglutaryl-CoA synthase-like isoform X1 [KO:K01641] [EC:2.3.3.10]
105043374  hydroxymethylglutaryl-CoA synthase isoform X1 [KO:K01641] [EC:2.3.3.10]
105036971  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [KO:K00021] [EC:1.1.1.34]
105039425  3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 [KO:K00021] [EC:1.1.1.34]
105052870  LOW QUALITY PROTEIN: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
105049376  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 [KO:K00021] [EC:1.1.1.34]
105050594  3-hydroxy-3-methylglutaryl-coenzyme A reductase-like [KO:K00021] [EC:1.1.1.34]
105033684  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
105043965  phosphomevalonate kinase, peroxisomal [KO:K00938] [EC:2.7.4.2]
105033863  diphosphomevalonate decarboxylase MVD2, peroxisomal [KO:K01597] [EC:4.1.1.33]
105057791  uncharacterized protein LOC105057791 isoform X1 [KO:K06981] [EC:2.7.4.26]
105061297  isopentenyl-diphosphate Delta-isomerase I [KO:K01823] [EC:5.3.3.2]
105046147  farnesyl pyrophosphate synthase [KO:K00787] [EC:2.5.1.1 2.5.1.10]
105047029  farnesyl pyrophosphate synthase 1-like isoform X1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
105059274  solanesyl-diphosphate synthase 1, mitochondrial isoform X1 [KO:K14066] [EC:2.5.1.1]
105032472  LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
105041045  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
105057980  geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
105060978  LOW QUALITY PROTEIN: heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
105048867  probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 [KO:K05356] [EC:2.5.1.84 2.5.1.85]
105047202  probable solanesyl-diphosphate synthase 3, chloroplastic [KO:K05356] [EC:2.5.1.84 2.5.1.85]
105034120  dehydrodolichyl diphosphate synthase 6-like [KO:K11778] [EC:2.5.1.87]
109504732  uncharacterized protein LOC109504732 isoform X1 [KO:K11778] [EC:2.5.1.87]
105036103  dehydrodolichyl diphosphate synthase 2 [KO:K11778] [EC:2.5.1.87]
105036358  dehydrodolichyl diphosphate synthase 2 isoform X1 [KO:K11778] [EC:2.5.1.87]
105039673  dehydrodolichyl diphosphate synthase 6 isoform X1 [KO:K11778] [EC:2.5.1.87]
105035983  uncharacterized protein LOC105035983 [KO:K11778] [EC:2.5.1.87]
105032269  geranylgeranyl diphosphate reductase, chloroplastic-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
105058545  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
105046866  alpha-terpineol synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
105057539  bifunctional levopimaradiene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
105038116  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
105034304  LOW QUALITY PROTEIN: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
105047991  protein farnesyltransferase subunit beta isoform X2 [KO:K05954] [EC:2.5.1.58]
105047140  protein farnesyltransferase subunit beta-like [KO:K05954] [EC:2.5.1.58]
105033869  CAAX prenyl protease 2 isoform X1 [KO:K08658] [EC:3.4.26.1]
105038234  CAAX prenyl protease 2 isoform X1 [KO:K08658] [EC:3.4.26.1]
105043320  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
105054204  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
105039667  probable protein-S-isoprenylcysteine O-methyltransferase [KO:K00587] [EC:2.1.1.100]
105050387  probable protein-S-isoprenylcysteine O-methyltransferase isoform X1 [KO:K00587] [EC:2.1.1.100]
105047777  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 isoform X1 [KO:K15889] [EC:3.1.1.-]
105056323  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X1 [KO:K15889] [EC:3.1.1.-]
105037230  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
105048681  uncharacterized protein LOC105048681 isoform X1 [KO:K15891] [EC:1.1.1.354]
105036025  probable phytol kinase 2, chloroplastic [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
egu00010  Glycolysis / Gluconeogenesis
egu00100  Steroid biosynthesis
egu00130  Ubiquinone and other terpenoid-quinone biosynthesis
egu00270  Cysteine and methionine metabolism
egu00510  N-Glycan biosynthesis
egu00904  Diterpenoid biosynthesis
egu00906  Carotenoid biosynthesis
egu00908  Zeatin biosynthesis
egu00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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