KEGG   PATHWAY: fme04141
Entry
fme04141                    Pathway                                
Name
Protein processing in endoplasmic reticulum - Fomitiporia mediterranea
Description
The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
fme04141  Protein processing in endoplasmic reticulum
fme04141

Other DBs
GO: 0030433 0034976
Organism
Fomitiporia mediterranea [GN:fme]
Gene
FOMMEDRAFT_124084  SecY protein [KO:K10956]
FOMMEDRAFT_116220  Pre protein translocase Sec Sec61-beta subunit [KO:K09481]
FOMMEDRAFT_113874  secE/sec61-gamma protein [KO:K07342]
FOMMEDRAFT_23136  translocation protein [KO:K12275]
FOMMEDRAFT_126005  hypothetical protein [KO:K09540]
FOMMEDRAFT_111367  oligosaccharyl transferase alpha subunit [KO:K12666]
FOMMEDRAFT_113338  oligosaccharyl transferase delta subunit [KO:K12667]
FOMMEDRAFT_90147  defender against death DAD protein [KO:K12668]
FOMMEDRAFT_104488  dolichyl-diphosphooligosaccharide-protein glycotransferase [KO:K12669]
FOMMEDRAFT_18422  Dolichyl-diphosphooligosaccharide-protein glycosyltransferase [KO:K12670]
FOMMEDRAFT_16902  glycosyltransferase family 66 protein [KO:K07151] [EC:2.4.99.18]
FOMMEDRAFT_87056  glycoside hydrolase family 63 protein [KO:K01228] [EC:3.2.1.106]
FOMMEDRAFT_105399  actin-like ATPase domain-containing protein [KO:K09486]
FOMMEDRAFT_166523  heat shock protein 70 [KO:K09490] [EC:3.6.4.10]
FOMMEDRAFT_170806  chaperone protein BipA [KO:K09490] [EC:3.6.4.10]
FOMMEDRAFT_135359  DnaJ-domain-containing protein [KO:K09521]
FOMMEDRAFT_168985  TPR-like protein [KO:K09523]
FOMMEDRAFT_117431  DnaJ-domain-containing protein [KO:K14002]
FOMMEDRAFT_30081  ribosomal protein S5 domain 2-like protein [KO:K09487]
FOMMEDRAFT_126253  heat shock protein Hsp90 [KO:K09487]
FOMMEDRAFT_16646  alpha-glucosidase [KO:K05546] [EC:3.2.1.207]
FOMMEDRAFT_101639  alpha-glucosidase [KO:K05546] [EC:3.2.1.207]
FOMMEDRAFT_110358  endoplasmic reticulum protein [KO:K08288]
FOMMEDRAFT_96000  Calreticulin-domain-containing protein [KO:K08054]
FOMMEDRAFT_136669  seven-hairpin glycosidase [KO:K01230] [EC:3.2.1.113]
FOMMEDRAFT_149844  seven-hairpin glycosidase [KO:K01230] [EC:3.2.1.113]
FOMMEDRAFT_143158  glycoside hydrolase [KO:K23741] [EC:3.2.1.209]
FOMMEDRAFT_164846  hypothetical protein [KO:K10082]
FOMMEDRAFT_158342  WD40 repeat-like protein [KO:K14003]
FOMMEDRAFT_141443  ARF/SAR [KO:K07953] [EC:3.6.5.-]
FOMMEDRAFT_30574  WD40 repeat-like protein [KO:K14004]
FOMMEDRAFT_138994  WD40 repeat-like protein [KO:K14005]
FOMMEDRAFT_130391  copii coat protein [KO:K14006]
FOMMEDRAFT_113318  CPII coat sec24 protein [KO:K14007]
FOMMEDRAFT_113703  hypothetical protein [KO:K14007]
FOMMEDRAFT_171561  hypothetical protein [KO:K11718] [EC:2.4.1.-]
FOMMEDRAFT_21740  alpha-mannosidase [KO:K10084]
FOMMEDRAFT_169574  thioredoxin-domain-containing protein [KO:K09580] [EC:5.3.4.1]
FOMMEDRAFT_89124  protein disulfide isomerase [KO:K09580] [EC:5.3.4.1]
FOMMEDRAFT_138554  protein disulfide isomerase [KO:K09584] [EC:5.3.4.1]
FOMMEDRAFT_112230  hypothetical protein [KO:K09584] [EC:5.3.4.1]
FOMMEDRAFT_125215  thioredoxin-domain-containing protein [KO:K13996] [EC:5.3.4.1]
FOMMEDRAFT_85183  endoplasmic oxidoreductin-1 [KO:K10976] [EC:1.8.4.-]
FOMMEDRAFT_145214  hypothetical protein [KO:K10088]
FOMMEDRAFT_105448  endoplasmic reticulum protein [KO:K14009]
FOMMEDRAFT_171494  Der1-like protein [KO:K13989]
FOMMEDRAFT_91875  hypothetical protein [KO:K24348]
FOMMEDRAFT_50534  SEP-domain-containing protein [KO:K14012]
FOMMEDRAFT_22319  hypothetical protein [KO:K14012]
FOMMEDRAFT_164470  AAA ATPase [KO:K13525]
FOMMEDRAFT_107130  polyubiquitin-tagged protein recognition complex, Npl4 component [KO:K14015]
FOMMEDRAFT_124851  UFD1-domain-containing protein [KO:K14016]
FOMMEDRAFT_124771  heat shock protein HSS1 [KO:K03283]
FOMMEDRAFT_18191  heat shock protein 70 [KO:K03283]
FOMMEDRAFT_104720  actin-like ATPase domain-containing protein [KO:K03283]
FOMMEDRAFT_17241  DnaJ-domain-containing protein [KO:K09503]
FOMMEDRAFT_139033  hypothetical protein [KO:K09503]
FOMMEDRAFT_25007  DnaJ-domain-containing protein [KO:K09518]
FOMMEDRAFT_104145  HSP90-domain-containing protein [KO:K04079]
FOMMEDRAFT_166063  nucleotide exchange factors-like protein [KO:K09562]
FOMMEDRAFT_97904  small heat shock protein [KO:K13993]
FOMMEDRAFT_59028  hypothetical protein [KO:K13993]
FOMMEDRAFT_95731  HSP20-like chaperone [KO:K13993]
FOMMEDRAFT_161434  HSP20-like chaperone [KO:K13993]
FOMMEDRAFT_147440  OTU-domain-containing protein [KO:K13719] [EC:3.1.2.-]
FOMMEDRAFT_20997  phospholipase A-2-activating protein [KO:K14018]
FOMMEDRAFT_134171  UV excision repair protein Rad23 [KO:K10839]
FOMMEDRAFT_17908  ubiquitin-domain-containing protein [KO:K04523]
FOMMEDRAFT_20456  Josephin-domain-containing protein [KO:K11863] [EC:3.4.22.-]
FOMMEDRAFT_171416  hypothetical protein [KO:K10597] [EC:2.3.2.27]
FOMMEDRAFT_171157  hypothetical protein [KO:K03237]
FOMMEDRAFT_144109  hypothetical protein [KO:K07765] [EC:3.4.24.85]
FOMMEDRAFT_109089  hypothetical protein [KO:K08852] [EC:2.7.11.1 3.1.26.-]
FOMMEDRAFT_101037  hypothetical protein [KO:K10661] [EC:2.3.2.27]
FOMMEDRAFT_77683  UBC-like protein [KO:K10578] [EC:2.3.2.23]
FOMMEDRAFT_149895  UBC-like protein [KO:K04554] [EC:2.3.2.23]
FOMMEDRAFT_81320  ubiquitin-conjugating enzyme [KO:K10575] [EC:2.3.2.23]
FOMMEDRAFT_132788  ubiquitin-conjugating enzyme [KO:K04555] [EC:2.3.2.23]
FOMMEDRAFT_138029  hypothetical protein [KO:K14022]
FOMMEDRAFT_123168  hypothetical protein [KO:K10601] [EC:2.3.2.27]
FOMMEDRAFT_72893  HCP-like protein [KO:K14026]
FOMMEDRAFT_143656  ubiquitin-conjugating enzyme E2 [KO:K06689] [EC:2.3.2.23]
FOMMEDRAFT_24276  ubiquitin-conjugating enzyme E2 4 [KO:K06689] [EC:2.3.2.23]
FOMMEDRAFT_126450  ring-box Roc1/Rbx1/Hrt1 protein [KO:K03868] [EC:2.3.2.32]
FOMMEDRAFT_128566  Cullin-domain-containing protein [KO:K03347]
FOMMEDRAFT_26674  ubiquitin-protein ligase [KO:K03094]
Compound
C00076  Calcium cation
G00009   
G00010   
G00011   
G00012   
G10694   
Reference
  Authors
Naidoo N
  Title
ER and aging-Protein folding and the ER stress response.
  Journal
Ageing Res Rev 8:150-9 (2009)
DOI:10.1016/j.arr.2009.03.001
Reference
  Authors
Malhotra JD, Kaufman RJ
  Title
The endoplasmic reticulum and the unfolded protein response.
  Journal
Semin Cell Dev Biol 18:716-31 (2007)
DOI:10.1016/j.semcdb.2007.09.003
Reference
  Authors
Maattanen P, Gehring K, Bergeron JJ, Thomas DY
  Title
Protein quality control in the ER: the recognition of misfolded proteins.
  Journal
Semin Cell Dev Biol 21:500-11 (2010)
DOI:10.1016/j.semcdb.2010.03.006
Reference
  Authors
Stolz A, Wolf DH
  Title
Endoplasmic reticulum associated protein degradation: a chaperone assisted journey to hell.
  Journal
Biochim Biophys Acta 1803:694-705 (2010)
DOI:10.1016/j.bbamcr.2010.02.005
Reference
  Authors
Dejgaard K, Theberge JF, Heath-Engel H, Chevet E, Tremblay ML, Thomas DY
  Title
Organization of the Sec61 translocon, studied by high resolution native electrophoresis.
  Journal
J Proteome Res 9:1763-71 (2010)
DOI:10.1021/pr900900x
Related
pathway
fme00510  N-Glycan biosynthesis
fme03050  Proteasome
fme03060  Protein export
KO pathway
ko04141   
LinkDB

DBGET integrated database retrieval system