KEGG   PATHWAY: gfr04350
Entry
gfr04350                    Pathway                                
Name
TGF-beta signaling pathway - Geospiza fortis (medium ground-finch)
Description
The transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines found in species ranging from worms and insects to mammals. A wide spectrum of cellular functions such as proliferation, apoptosis, differentiation and migration are regulated by TGF-beta family members. TGF-beta family member binds to the Type II receptor and recruits Type I, whereby Type II receptor phosphorylates and activates Type I. The Type I receptor, in turn, phosphorylates receptor-activated Smads ( R-Smads: Smad1, Smad2, Smad3, Smad5, and Smad8). Once phosphorylated, R-Smads associate with the co-mediator Smad, Smad4, and the heteromeric complex then translocates into the nucleus. In the nucleus, Smad complexes activate specific genes through cooperative interactions with other DNA-binding and coactivator (or co-repressor) proteins.
Class
Environmental Information Processing; Signal transduction
Pathway map
gfr04350  TGF-beta signaling pathway
gfr04350

Other DBs
GO: 0007179
Organism
Geospiza fortis (medium ground-finch) [GN:gfr]
Gene
102041093  CHRD; chordin [KO:K04657]
102035349  NOG; noggin [KO:K04658]
102033688  NBL1; neuroblastoma 1, DAN family BMP antagonist [KO:K19558]
102037078  GREM2; gremlin 2, DAN family BMP antagonist [KO:K23318]
102039461  GREM1; gremlin 1, DAN family BMP antagonist [KO:K23318]
102031762  THBS1; thrombospondin 1 [KO:K16857]
102036134  DCN; decorin [KO:K04660]
102033351  FMOD; fibromodulin [KO:K08121]
102044030  LEFTY1; left-right determination factor 1 [KO:K04668]
102038114  FST; follistatin [KO:K04661]
102037777  BMP2; bone morphogenetic protein 2 [KO:K21283]
102033365  bone morphogenetic protein 7-like [KO:K21283]
102034024  bone morphogenetic protein 2-like [KO:K21283]
102044724  BMP4; bone morphogenetic protein 4 [KO:K04662]
102041814  BMP6; bone morphogenetic protein 6 [KO:K16620]
102033247  INHBB; inhibin beta B subunit [KO:K22687]
102034411  TF; transferrin [KO:K14736]
102037005  BMP5; bone morphogenetic protein 5 [KO:K04663]
102043241  BMP7; bone morphogenetic protein 7 [KO:K16621]
102038924  BMP8B; bone morphogenetic protein 8B [KO:K16622]
102044543  GDF5; growth differentiation factor 5 [KO:K04664]
102032887  GDF6; growth differentiation factor 6 [KO:K20012]
102035736  GDF7; growth differentiation factor 7 [KO:K20013]
102036385  AMH; anti-Mullerian hormone [KO:K04665]
102042890  IFNG; interferon gamma [KO:K04687]
102043887  THSD4; thrombospondin type 1 domain containing 4 [KO:K23377]
102037814  FBN1; fibrillin 1 [KO:K06825]
102040757  LTBP1; latent transforming growth factor beta binding protein 1 [KO:K19559]
102037698  TGFB2; transforming growth factor beta 2 [KO:K13376]
102037028  TGFB3; transforming growth factor beta 3 [KO:K13377]
102042981  INHBA; inhibin beta A subunit [KO:K04667]
106632046  inhibin beta C chain-like [KO:K22688]
102035203  inhibin beta C chain-like [KO:K22688]
102032316  BMPR1A; bone morphogenetic protein receptor type 1A [KO:K04673] [EC:2.7.11.30]
102045388  BMPR1B; bone morphogenetic protein receptor type 1B [KO:K13578] [EC:2.7.11.30]
102040859  ACVR1; activin A receptor type 1 [KO:K04675] [EC:2.7.11.30]
102043611  BMPR2; bone morphogenetic protein receptor type 2 [KO:K04671] [EC:2.7.11.30]
102039219  ACVR2A; activin A receptor type 2A [KO:K04670] [EC:2.7.11.30]
102033027  HFE2; hemochromatosis type 2 (juvenile) [KO:K23100]
102040282  NEO1; neogenin 1 [KO:K06766]
102041725  TFRC; transferrin receptor [KO:K06503]
102031733  RGMA; repulsive guidance molecule family member a [KO:K23096]
102035367  RGMB; repulsive guidance molecule family member b [KO:K06847]
102037879  TGFBR1; transforming growth factor beta receptor 1 [KO:K04674] [EC:2.7.11.30]
102044945  TGF-beta receptor type-2-like [KO:K04388] [EC:2.7.11.30]
102040558  TGFBR2; transforming growth factor beta receptor 2 [KO:K04388] [EC:2.7.11.30]
102044429  leucine-rich repeat-containing protein 32-like [KO:K26316]
102037907  leucine-rich repeat-containing protein 32-like [KO:K26316]
102034639  LRRC32; leucine rich repeat containing 32 [KO:K26316]
102035347  NRROS; negative regulator of reactive oxygen species [KO:K26317]
102041687  ACVR2B; activin A receptor type 2B [KO:K13596] [EC:2.7.11.30]
102040579  ACVR1C; activin A receptor type 1C [KO:K13568] [EC:2.7.11.30]
102035799  BAMBI; BMP and activin membrane bound inhibitor [KO:K10162]
102039691  SMAD1; SMAD family member 1 [KO:K04676]
102040705  SMAD5; SMAD family member 5 [KO:K16790]
102033936  SMAD9; SMAD family member 9 [KO:K16791]
102040865  mothers against decapentaplegic homolog 2-like [KO:K04500]
102044404  SMAD2; SMAD family member 2 [KO:K04500]
102040325  SMAD3; SMAD family member 3 [KO:K23605]
102041942  mothers against decapentaplegic homolog 4-like [KO:K04501]
102043998  SMAD4; SMAD family member 4 [KO:K04501]
102039841  ZBTB7B; zinc finger and BTB domain containing 7B [KO:K04677]
102040155  SMAD6; SMAD family member 6 [KO:K04677]
102041254  mothers against decapentaplegic homolog 7-like [KO:K19631]
102045024  SMAD7; SMAD family member 7 [KO:K19631]
102043782  SMURF1; SMAD specific E3 ubiquitin protein ligase 1 [KO:K04678] [EC:2.3.2.26]
102038460  SMURF2; SMAD specific E3 ubiquitin protein ligase 2 [KO:K04678] [EC:2.3.2.26]
102035630  ZFYVE9; zinc finger FYVE-type containing 9 [KO:K04679]
102035756  ZFYVE16; zinc finger FYVE-type containing 16 [KO:K04679]
102037823  RBX1; ring-box 1 [KO:K03868] [EC:2.3.2.32]
102038503  CUL1; cullin 1 [KO:K03347]
102038546  SKP1; S-phase kinase associated protein 1 [KO:K03094]
102043401  MAPK1; mitogen-activated protein kinase 1 [KO:K04371] [EC:2.7.11.24]
102034459  RHOA; ras homolog family member A [KO:K04513]
102040824  ROCK1; Rho associated coiled-coil containing protein kinase 1 [KO:K04514] [EC:2.7.11.1]
102036925  PPP2CA; protein phosphatase 2 catalytic subunit alpha [KO:K04382] [EC:3.1.3.16]
102042538  PPP2CB; protein phosphatase 2 catalytic subunit beta [KO:K04382] [EC:3.1.3.16]
102036821  RPS6KB1; ribosomal protein S6 kinase B1 [KO:K04688] [EC:2.7.11.1]
102034885  ID2; inhibitor of DNA binding 2, HLH protein [KO:K17693]
102036830  ID3; inhibitor of DNA binding 3, HLH protein [KO:K17694]
102034865  RBL1; RB transcriptional corepressor like 1 [KO:K04681]
102032445  E2F4; E2F transcription factor 4 [KO:K04682]
102037886  E2F5; E2F transcription factor 5 [KO:K04682]
102036523  TFDP1; transcription factor Dp-1 [KO:K04683]
102038495  EP300; E1A binding protein p300 [KO:K04498] [EC:2.3.1.48]
102043483  CREBBP; CREB binding protein [KO:K04498] [EC:2.3.1.48]
102043455  SKIL; SKI like proto-oncogene [KO:K18499]
102033513  SKI; SKI proto-oncogene [KO:K26503]
102034105  SIN3A; SIN3 transcription regulator family member A [KO:K11644]
102038486  HDAC2; histone deacetylase 2 [KO:K06067] [EC:3.5.1.98]
102045090  HDAC1; histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
102041117  NCOR1; nuclear receptor corepressor 1 [KO:K04650]
102038209  TGIF1; TGFB induced factor homeobox 1 [KO:K19383]
102034096  PITX2; paired like homeodomain 2 [KO:K04686]
Compound
C14819  Fe3+
Reference
  Authors
Shi Y, Massague J.
  Title
Mechanisms of TGF-beta signaling from cell membrane to the nucleus.
  Journal
Cell 113:685-700 (2003)
DOI:10.1016/S0092-8674(03)00432-X
Reference
  Authors
Derynck R, Zhang YE.
  Title
Smad-dependent and Smad-independent pathways in TGF-beta family signalling.
  Journal
Nature 425:577-84 (2003)
DOI:10.1038/nature02006
Reference
  Authors
Massague J.
  Title
How cells read TGF-beta signals.
  Journal
Nat Rev Mol Cell Biol 1:169-78 (2000)
DOI:10.1038/35043051
Reference
  Authors
Siegel PM, Massague J.
  Title
Cytostatic and apoptotic actions of TGF-beta in homeostasis and cancer.
  Journal
Nat Rev Cancer 3:807-21 (2003)
DOI:10.1038/nrc1208
Reference
  Authors
Shimasaki S, Moore RK, Otsuka F, Erickson GF.
  Title
The bone morphogenetic protein system in mammalian reproduction.
  Journal
Endocr Rev 25:72-101 (2004)
DOI:10.1210/er.2003-0007
Reference
  Authors
De Robertis EM, Larrain J, Oelgeschlager M, Wessely O.
  Title
The establishment of Spemann's organizer and patterning of the vertebrate embryo.
  Journal
Nat Rev Genet 1:171-81 (2000)
DOI:10.1038/35042039
Reference
  Authors
Gumienny TL, Padgett RW.
  Title
The other side of TGF-beta superfamily signal regulation: thinking outside the cell.
  Journal
Trends Endocrinol Metab 13:295-9 (2002)
DOI:10.1016/S1043-2760(02)00615-X
Reference
  Authors
Hamada H, Meno C, Watanabe D, Saijoh Y.
  Title
Establishment of vertebrate left-right asymmetry.
  Journal
Nat Rev Genet 3:103-13 (2002)
DOI:10.1038/nrg732
Reference
  Authors
Chang H, Brown CW, Matzuk MM.
  Title
Genetic analysis of the mammalian transforming growth factor-beta superfamily.
  Journal
Endocr Rev 23:787-823 (2002)
DOI:10.1210/er.2002-0003
Reference
  Authors
Morita K, Chow KL, Ueno N.
  Title
Regulation of body length and male tail ray pattern formation of Caenorhabditis elegans by a member of TGF-beta family.
  Journal
Development 126:1337-47 (1999)
Reference
PMID:9847239
  Authors
Krishna S, Maduzia LL, Padgett RW.
  Title
Specificity of TGFbeta signaling is conferred by distinct type I receptors and their associated SMAD proteins in Caenorhabditis elegans.
  Journal
Development 126:251-60 (1999)
Reference
  Authors
Chen Y, Mironova E, Whitaker LL, Edwards L, Yost HJ, Ramsdell AF.
  Title
ALK4 functions as a receptor for multiple TGF beta-related ligands to regulate left-right axis determination and mesoderm induction in Xenopus.
  Journal
Dev Biol 268:280-94 (2004)
DOI:10.1016/j.ydbio.2003.12.035
Reference
  Authors
Onichtchouk D, Chen YG, Dosch R, Gawantka V, Delius H, Massague J, Niehrs C
  Title
Silencing of TGF-beta signalling by the pseudoreceptor BAMBI.
  Journal
Nature 401:480-5 (1999)
DOI:10.1038/46794
Reference
  Authors
Yan X, Lin Z, Chen F, Zhao X, Chen H, Ning Y, Chen YG
  Title
Human BAMBI cooperates with Smad7 to inhibit transforming growth factor-beta signaling.
  Journal
J Biol Chem 284:30097-104 (2009)
DOI:10.1074/jbc.M109.049304
Reference
PMID:8093006
  Authors
Hildebrand A, Romaris M, Rasmussen LM, Heinegard D, Twardzik DR, Border WA, Ruoslahti E
  Title
Interaction of the small interstitial proteoglycans biglycan, decorin and fibromodulin with transforming growth factor beta.
  Journal
Biochem J 302 ( Pt 2):527-34 (1994)
DOI:10.1042/bj3020527
Reference
  Authors
Soo C, Hu FY, Zhang X, Wang Y, Beanes SR, Lorenz HP, Hedrick MH, Mackool RJ, Plaas A, Kim SJ, Longaker MT, Freymiller E, Ting K
  Title
Differential expression of fibromodulin, a transforming growth factor-beta modulator, in fetal skin development and scarless repair.
  Journal
Am J Pathol 157:423-33 (2000)
DOI:10.1016/s0002-9440(10)64555-5
Reference
  Authors
Anderson GJ, Frazer DM
  Title
Iron metabolism meets signal transduction.
  Journal
Nat Genet 38:503-4 (2006)
DOI:10.1038/ng0506-503
Reference
  Authors
Canali S, Core AB, Zumbrennen-Bullough KB, Merkulova M, Wang CY, Schneyer AL, Pietrangelo A, Babitt JL
  Title
Activin B Induces Noncanonical SMAD1/5/8 Signaling via BMP Type I Receptors in Hepatocytes: Evidence for a Role in Hepcidin Induction by Inflammation in Male Mice.
  Journal
Endocrinology 157:1146-62 (2016)
DOI:10.1210/en.2015-1747
Reference
  Authors
Ganz T, Nemeth E
  Title
Iron homeostasis in host defence and inflammation.
  Journal
Nat Rev Immunol 15:500-10 (2015)
DOI:10.1038/nri3863
Reference
  Authors
Babitt JL, Zhang Y, Samad TA, Xia Y, Tang J, Campagna JA, Schneyer AL, Woolf CJ, Lin HY
  Title
Repulsive guidance molecule (RGMa), a DRAGON homologue, is a bone morphogenetic protein co-receptor.
  Journal
J Biol Chem 280:29820-7 (2005)
DOI:10.1074/jbc.M503511200
Reference
  Authors
Samad TA, Rebbapragada A, Bell E, Zhang Y, Sidis Y, Jeong SJ, Campagna JA, Perusini S, Fabrizio DA, Schneyer AL, Lin HY, Brivanlou AH, Attisano L, Woolf CJ
  Title
DRAGON, a bone morphogenetic protein co-receptor.
  Journal
J Biol Chem 280:14122-9 (2005)
DOI:10.1074/jbc.M410034200
Reference
  Authors
Vogt AS, Arsiwala T, Mohsen M, Vogel M, Manolova V, Bachmann MF
  Title
On Iron Metabolism and Its Regulation.
  Journal
Int J Mol Sci 22:ijms22094591 (2021)
DOI:10.3390/ijms22094591
Reference
  Authors
Ikushima H, Miyazono K
  Title
TGFbeta signalling: a complex web in cancer progression.
  Journal
Nat Rev Cancer 10:415-24 (2010)
DOI:10.1038/nrc2853
Related
pathway
gfr04010  MAPK signaling pathway
gfr04110  Cell cycle
gfr04120  Ubiquitin mediated proteolysis
gfr04210  Apoptosis
KO pathway
ko04350   
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