KEGG   PATHWAY: lco04146
Entry
lco04146                    Pathway                                
Name
Peroxisome - Larimichthys crocea (large yellow croaker)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
lco04146  Peroxisome
lco04146

Other DBs
GO: 0005777
Organism
Larimichthys crocea (large yellow croaker) [GN:lco]
Gene
104935751  pex16; peroxisomal biogenesis factor 16 [KO:K13335]
104939686  pex3; peroxisomal biogenesis factor 3 [KO:K13336]
104936433  pex19; peroxisomal biogenesis factor 19 [KO:K13337]
104926062  abcd3; ATP-binding cassette sub-family D member 3 isoform X2 [KO:K05677] [EC:7.6.2.4]
104922069  pex1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
104936670  pex6; peroxisome biogenesis factor 6 [KO:K13339]
104925320  pex26; peroxisome assembly protein 26 [KO:K13340]
104934139  pex7; peroxisomal biogenesis factor 7 isoform X1 [KO:K13341]
104931948  pex5l; PEX5-related protein [KO:K13342]
104935608  PEX5-related protein isoform X1 [KO:K13342]
104932535  pex5; peroxisomal biogenesis factor 5 isoform X2 [KO:K13342]
104919438  pex14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
104925898  pex13; peroxisome biogenesis factor 13 [KO:K13344]
109137859  pex12; peroxisome assembly protein 12 [KO:K13345]
104931766  pex10; peroxisome biogenesis factor 10 [KO:K13346]
104922596  pex2; peroxisome biogenesis factor 2 [KO:K06664]
104937260  pxmp2; peroxisomal membrane protein 2 [KO:K13347]
104930917  mpv17l2; mpv17-like protein 2 [KO:K13348]
104928823  mpv17; protein Mpv17 [KO:K13348]
109136988  mpv17-like protein [KO:K13349]
104923396  mpv17-like protein [KO:K13349]
104921926  mpv17l; mpv17-like protein [KO:K13349]
104922029  pxmp4; peroxisomal membrane protein 4 [KO:K13350]
104933065  pex11b; peroxisomal membrane protein 11B isoform X1 [KO:K13352]
104928389  pex11g; peroxisomal membrane protein 11C [KO:K13353]
104918802  peroxisomal membrane protein PMP34 [KO:K13354]
104917629  peroxisomal membrane protein PMP34 [KO:K13354]
104927751  hacl1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
104926468  amacr; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
104930594  phyh; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
104939398  acox3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
104932977  acox1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
104920820  hsd17b4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
104936979  scp2; non-specific lipid-transfer protein [KO:K08764] [EC:2.3.1.176]
104919050  ehhadh; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
104927325  acaa1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
104919685  decr2; peroxisomal 2,4-dienoyl-CoA reductase isoform X3 [KO:K13237] [EC:1.3.1.124]
104938714  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X1 [KO:K12663] [EC:5.3.3.21]
109137402  ech1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
104935476  ATP-binding cassette sub-family D member 1 isoform X2 [KO:K05675] [EC:7.6.2.4]
104931543  abcd2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
104930542  abcd4; ATP-binding cassette sub-family D member 4 isoform X1 [KO:K05678] [EC:7.6.2.8]
104919780  very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
104919781  very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
104940592  very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
104940593  very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
104931160  long-chain-fatty-acid--CoA ligase 1-like [KO:K01897] [EC:6.2.1.3]
104930196  long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
104933158  acsl5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
104922414  acsl4; long-chain-fatty-acid--CoA ligase 4 [KO:K01897] [EC:6.2.1.3]
104921040  long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
104919210  long-chain-fatty-acid--CoA ligase 3 isoform X1 [KO:K01897] [EC:6.2.1.3]
104934361  acsl3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
104928230  long-chain-fatty-acid--CoA ligase 1-like [KO:K01897] [EC:6.2.1.3]
104939220  pecr; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
104940466  nudt7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
104934769  nudt12; peroxisomal NADH pyrophosphatase NUDT12 [KO:K03426] [EC:3.6.1.22]
104938342  nudt13; nucleoside diphosphate-linked moiety X motif 13 isoform X2 [KO:K03426] [EC:3.6.1.22]
104921779  nudt19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
104936755  acot8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
104923081  crat; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
104922513  carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
104926247  carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
104923077  peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
104940192  peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
104920681  mlycd; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
104932463  gnpat; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
104923569  dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
104924426  agps; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
104933352  fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
104925325  fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
104921256  mvk; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
104937305  pmvk; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
104929186  serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
104926021  serine--pyruvate aminotransferase, mitochondrial [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
104937256  dao; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
104929419  ddo; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
104917827  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
104937776  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
104931681  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
104924262  paox; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
104930748  pipox; peroxisomal sarcosine oxidase isoform X1 [KO:K00306] [EC:1.5.3.1 1.5.3.7]
104919304  hmgcl; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
104940188  hmgcll1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1 [KO:K01640] [EC:4.1.3.4]
104938334  hao1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
104921490  hao2; hydroxyacid oxidase 2 isoform X3 [KO:K11517] [EC:1.1.3.15]
104922375  cat; catalase [KO:K03781] [EC:1.11.1.6]
104926322  peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
104923808  sod1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
104922545  sod2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
104935071  peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
104921941  peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
104928568  ephx2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
104938633  LOW QUALITY PROTEIN: xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
104932907  dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
lco00071  Fatty acid degradation
lco00120  Primary bile acid biosynthesis
lco00230  Purine metabolism
lco00564  Glycerophospholipid metabolism
lco00565  Ether lipid metabolism
lco00830  Retinol metabolism
lco00900  Terpenoid backbone biosynthesis
lco03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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