KEGG   PATHWAY: ler00270
Entry
ler00270                    Pathway                                
Name
Cysteine and methionine metabolism - Leclercia sp. Colony189
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
ler00270  Cysteine and methionine metabolism
ler00270

Module
ler_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:ler00270]
ler_M00021  Cysteine biosynthesis, serine => cysteine [PATH:ler00270]
ler_M00034  Methionine salvage pathway [PATH:ler00270]
Other DBs
GO: 0006534 0006555
Organism
Leclercia sp. Colony189 [GN:ler]
Gene
GNG29_00580  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
GNG29_16295  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
GNG29_05245  pyridoxal-phosphate dependent enzyme [KO:K01738] [EC:2.5.1.47]
GNG29_19265  metC; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
GNG29_10080  putative C-S lyase [KO:K14155] [EC:4.4.1.13]
GNG29_04785  mmuM; homocysteine S-methyltransferase [KO:K00547] [EC:2.1.1.10]
GNG29_01070  metH; methionine synthase [KO:K00548] [EC:2.1.1.13]
GNG29_21985  metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]
GNG29_11735  methionine synthase [KO:K00549] [EC:2.1.1.14]
GNG29_19015  metK; methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
GNG29_04110  speD; adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]
GNG29_04115  speE; polyamine aminopropyltransferase [KO:K00797] [EC:2.5.1.16]
GNG29_04265  mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]
GNG29_06120  S-methyl-5-thioribose kinase [KO:K00899] [EC:2.7.1.100]
GNG29_17015  pgeF; polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
GNG29_06125  mtnA; S-methyl-5-thioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
GNG29_06140  methylthioribulose 1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
GNG29_06135  mtnC; acireductone synthase [KO:K09880] [EC:3.1.3.77]
GNG29_06130  acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
GNG29_01240  aromatic amino acid transaminase [KO:K00832] [EC:2.6.1.57]
GNG29_13350  GAF domain-containing protein [KO:K08968] [EC:1.8.4.14]
GNG29_14610  dcm; DNA (cytosine-5-)-methyltransferase [KO:K00558] [EC:2.1.1.37]
GNG29_18010  luxS; S-ribosylhomocysteine lyase [KO:K07173] [EC:4.4.1.21]
GNG29_01120  lysC; lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
GNG29_03550  thrA; bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
GNG29_22420  metL; bifunctional aspartate kinase/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
GNG29_21370  asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
GNG29_01045  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
GNG29_22425  metB; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
GNG29_22240  ilvE; branched-chain-amino-acid transaminase [KO:K00826] [EC:2.6.1.42]
GNG29_18015  gshA; glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
GNG29_19040  gshB; glutathione synthase [KO:K01920] [EC:6.3.2.3]
GNG29_07825  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00813] [EC:2.6.1.1]
GNG29_16675  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
GNG29_10710  L-lactate dehydrogenase [KO:K00016] [EC:1.1.1.27]
GNG29_18610  aspartate/glutamate racemase [KO:K25316] [EC:5.1.1.10]
GNG29_14440  dcyD; D-cysteine desulfhydrase [KO:K05396] [EC:4.4.1.15]
GNG29_20525  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GNG29_18410  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
GNG29_13245  sdaA; L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
GNG29_16320  cysM; cysteine synthase CysM [KO:K12339] [EC:2.5.1.144]
GNG29_18850  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
GNG29_07725  serC; 3-phosphoserine/phosphohydroxythreonine transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
ler00010  Glycolysis / Gluconeogenesis
ler00250  Alanine, aspartate and glutamate metabolism
ler00260  Glycine, serine and threonine metabolism
ler00290  Valine, leucine and isoleucine biosynthesis
ler00430  Taurine and hypotaurine metabolism
ler00480  Glutathione metabolism
ler00620  Pyruvate metabolism
ler00640  Propanoate metabolism
ler00770  Pantothenate and CoA biosynthesis
ler00900  Terpenoid backbone biosynthesis
ler00920  Sulfur metabolism
KO pathway
ko00270   
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