KEGG   PATHWAY: muo00270
Entry
muo00270                    Pathway                                
Name
Cysteine and methionine metabolism - Microcaecilia unicolor
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
muo00270  Cysteine and methionine metabolism
muo00270

Module
muo_M00034  Methionine salvage pathway [PATH:muo00270]
muo_M00035  Methionine degradation [PATH:muo00270]
muo_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:muo00270]
Other DBs
GO: 0006534 0006555
Organism
Microcaecilia unicolor [GN:muo]
Gene
115472000  CTH; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
115472064  KYAT3; kynurenine--oxoglutarate transaminase 3 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
115473161  kynurenine--oxoglutarate transaminase 1-like isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
115470541  CBS; cystathionine beta-synthase isoform X1 [KO:K01697] [EC:4.2.1.22]
115463048  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
115469055  homocysteine S-methyltransferase 1-like isoform X1 [KO:K00547] [EC:2.1.1.10]
115465787  MTR; LOW QUALITY PROTEIN: methionine synthase [KO:K00548] [EC:2.1.1.13]
115469237  MAT2A; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
115470253  MAT1A; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
115477000  MAT2B; methionine adenosyltransferase 2 subunit beta [KO:K00789] [EC:2.5.1.6]
115467339  AMD1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
115456700  SRM; spermidine synthase [KO:K00797] [EC:2.5.1.16]
115469520  SMS; spermine synthase [KO:K00802] [EC:2.5.1.22]
115462422  MTAP; S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
115467909  LACC1; laccase domain-containing protein 1 isoform X1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
115465979  MRI1; methylthioribose-1-phosphate isomerase isoform X1 [KO:K08963] [EC:5.3.1.23]
115468793  APIP; methylthioribulose-1-phosphate dehydratase isoform X1 [KO:K08964] [EC:4.2.1.109]
115462100  ENOPH1; LOW QUALITY PROTEIN: enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
115464796  ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
115459133  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like [KO:K08967] [EC:1.13.11.53 1.13.11.54]
115471010  TAT; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
115465000  IL4I1; L-amino-acid oxidase [KO:K03334] [EC:1.4.3.2]
115465289  GNMT; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
115466071  DNMT1; DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
115467000  LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase 3A-like [KO:K17398] [EC:2.1.1.37]
115467001  DNMT3A; DNA (cytosine-5)-methyltransferase 3A [KO:K17398] [EC:2.1.1.37]
115481844  AHCYL1; S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
115476103  AHCY; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
115479097  AHCYL2; adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
115477187  BCAT1; branched-chain-amino-acid aminotransferase, cytosolic isoform X1 [KO:K00826] [EC:2.6.1.42]
115466537  BCAT2; branched-chain-amino-acid aminotransferase, mitochondrial [KO:K00826] [EC:2.6.1.42]
115462930  AGXT2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
115467201  GCLC; LOW QUALITY PROTEIN: glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
115472117  GCLM; glutamate--cysteine ligase regulatory subunit [KO:K11205]
115475578  GSS; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
115462785  cysteine dioxygenase type 1-like [KO:K00456] [EC:1.13.11.20]
115463206  CDO1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
115468110  GOT1L1; putative aspartate aminotransferase, cytoplasmic 2 isoform X1 [KO:K14454] [EC:2.6.1.1]
115470044  GOT1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
115470422  GOT2; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
115474603  TST; thiosulfate sulfurtransferase isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
115474616  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
115467947  L-lactate dehydrogenase B chain-like [KO:K00016] [EC:1.1.1.27]
115468929  L-lactate dehydrogenase A chain isoform X1 [KO:K00016] [EC:1.1.1.27]
115477349  L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
115465585  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
115456679  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
115480443  L-serine dehydratase/L-threonine deaminase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
115474244  LOW QUALITY PROTEIN: D-3-phosphoglycerate dehydrogenase-like [KO:K00058] [EC:1.1.1.95 1.1.1.399]
115474404  D-3-phosphoglycerate dehydrogenase-like [KO:K00058] [EC:1.1.1.95 1.1.1.399]
115478821  PSAT1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
muo00010  Glycolysis / Gluconeogenesis
muo00250  Alanine, aspartate and glutamate metabolism
muo00260  Glycine, serine and threonine metabolism
muo00290  Valine, leucine and isoleucine biosynthesis
muo00430  Taurine and hypotaurine metabolism
muo00480  Glutathione metabolism
muo00620  Pyruvate metabolism
muo00640  Propanoate metabolism
muo00770  Pantothenate and CoA biosynthesis
muo00900  Terpenoid backbone biosynthesis
muo00920  Sulfur metabolism
KO pathway
ko00270   
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