KEGG   PATHWAY: myd04146
Entry
myd04146                    Pathway                                
Name
Peroxisome - Myotis davidii (David's myotis)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
myd04146  Peroxisome
myd04146

Other DBs
GO: 0005777
Organism
Myotis davidii (David's myotis) [GN:myd]
Gene
102771376  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
102758423  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
102755967  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
102754249  ABCD3; ATP binding cassette subfamily D member 3 [KO:K05677] [EC:7.6.2.4]
102760230  PEX1; peroxisomal biogenesis factor 1 [KO:K13338]
102763467  PEX6; peroxisomal biogenesis factor 6 [KO:K13339]
102752119  PEX26; peroxisomal biogenesis factor 26 [KO:K13340]
102771028  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
102753098  PEX5; peroxisomal biogenesis factor 5 [KO:K13342]
102760853  PEX5L; peroxisomal biogenesis factor 5 like [KO:K13342]
102768066  PEX14; peroxisomal biogenesis factor 14 [KO:K13343]
102773614  PEX13; peroxisomal biogenesis factor 13 [KO:K13344]
102767264  PEX12; peroxisomal biogenesis factor 12 [KO:K13345]
102775080  PEX10; peroxisomal biogenesis factor 10 [KO:K13346]
102753790  PEX2; peroxisomal biogenesis factor 2 [KO:K06664]
102755113  PXMP2; peroxisomal membrane protein 2 [KO:K13347]
102763084  MPV17L2; MPV17 mitochondrial inner membrane protein like 2 [KO:K13348]
102766177  MPV17; MPV17, mitochondrial inner membrane protein [KO:K13348]
102756373  MPV17L; MPV17 mitochondrial inner membrane protein like [KO:K13349]
102770096  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
102759736  PEX11A; peroxisomal biogenesis factor 11 alpha [KO:K13351]
102759669  PEX11B; peroxisomal biogenesis factor 11 beta [KO:K13352]
102775015  PEX11G; peroxisomal biogenesis factor 11 gamma [KO:K13353]
102773875  SLC25A17; solute carrier family 25 member 17 [KO:K13354]
102760568  HACL1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
102757512  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
102753013  PHYH; phytanoyl-CoA 2-hydroxylase [KO:K00477] [EC:1.14.11.18]
102752805  ACOX1; acyl-CoA oxidase 1 [KO:K00232] [EC:1.3.3.6]
102766056  ACOX3; acyl-CoA oxidase 3, pristanoyl [KO:K00232] [EC:1.3.3.6]
102766328  ACOX2; acyl-CoA oxidase 2 [KO:K10214] [EC:1.17.99.3]
102767159  HSD17B4; hydroxysteroid 17-beta dehydrogenase 4 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
102765227  SCP2; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
102764710  acyl-coenzyme A amino acid N-acyltransferase 2 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
102764048  acyl-coenzyme A amino acid N-acyltransferase 2 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
102771761  EHHADH; enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
102759768  ACAA1; acetyl-CoA acyltransferase 1 [KO:K07513] [EC:2.3.1.16]
102760553  DECR2; 2,4-dienoyl-CoA reductase 2 [KO:K13237] [EC:1.3.1.124]
102770725  ECH1; enoyl-CoA hydratase 1 [KO:K12663] [EC:5.3.3.21]
102761983  ABCD1; ATP binding cassette subfamily D member 1 [KO:K05675] [EC:7.6.2.4]
102770876  ABCD2; ATP binding cassette subfamily D member 2 [KO:K05676] [EC:7.6.2.4]
102758816  ABCD4; ATP binding cassette subfamily D member 4 [KO:K05678] [EC:7.6.2.8]
102767645  SLC27A2; solute carrier family 27 member 2 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
102770310  ACSL4; acyl-CoA synthetase long-chain family member 4 [KO:K01897] [EC:6.2.1.3]
102761529  ACSL1; acyl-CoA synthetase long-chain family member 1 [KO:K01897] [EC:6.2.1.3]
102765104  ACSL5; acyl-CoA synthetase long-chain family member 5 [KO:K01897] [EC:6.2.1.3]
102768995  ACSL6; acyl-CoA synthetase long-chain family member 6 [KO:K01897] [EC:6.2.1.3]
102773062  ACSL3; acyl-CoA synthetase long-chain family member 3 [KO:K01897] [EC:6.2.1.3]
102767284  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
102769706  ECI2; enoyl-CoA delta isomerase 2 [KO:K13239] [EC:5.3.3.8]
102768569  NUDT7; nudix hydrolase 7 [KO:K17879] [EC:3.6.1.77]
102773588  NUDT12; nudix hydrolase 12 [KO:K03426] [EC:3.6.1.22]
102751414  NUDT13; nudix hydrolase 13 [KO:K03426] [EC:3.6.1.22]
102767910  ACOT8; acyl-CoA thioesterase 8 [KO:K11992] [EC:3.1.2.27]
102766836  CRAT; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
102755354  CROT; carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
102753196  GNPAT; glyceronephosphate O-acyltransferase [KO:K00649] [EC:2.3.1.42]
102756569  AGPS; alkylglycerone phosphate synthase [KO:K00803] [EC:2.5.1.26]
102756698  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
102761437  FAR1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
102752866  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
102759157  PMVK; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
102764532  AGXT; alanine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
102759757  DAO; D-amino acid oxidase [KO:K00273] [EC:1.4.3.3]
102760479  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
102757893  IDH1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
102759038  IDH2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
102769158  PAOX; polyamine oxidase [KO:K00308] [EC:1.5.3.13]
102772313  PIPOX; pipecolic acid and sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
102772561  HMGCL; 3-hydroxymethyl-3-methylglutaryl-CoA lyase [KO:K01640] [EC:4.1.3.4]
102767277  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 [KO:K01640] [EC:4.1.3.4]
102775501  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
102773058  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
102769660  CAT; catalase [KO:K03781] [EC:1.11.1.6]
102754279  PRDX5; peroxiredoxin 5 [KO:K11187] [EC:1.11.1.24]
102754184  SOD1; superoxide dismutase 1 [KO:K04565] [EC:1.15.1.1]
102755719  SOD2; superoxide dismutase 2 [KO:K04564] [EC:1.15.1.1]
102768087  NOS2; nitric oxide synthase 2 [KO:K13241] [EC:1.14.13.39]
102764098  PRDX1; peroxiredoxin 1 [KO:K13279] [EC:1.11.1.24]
102755564  EPHX2; epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
102751529  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
102773370  XDH; xanthine dehydrogenase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
102772479  dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
myd00071  Fatty acid degradation
myd00120  Primary bile acid biosynthesis
myd00230  Purine metabolism
myd00564  Glycerophospholipid metabolism
myd00565  Ether lipid metabolism
myd00830  Retinol metabolism
myd00900  Terpenoid backbone biosynthesis
myd03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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