KEGG   PATHWAY: pcoo04146
Entry
pcoo04146                   Pathway                                
Name
Peroxisome - Puma concolor (puma)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
pcoo04146  Peroxisome
pcoo04146

Other DBs
GO: 0005777
Organism
Puma concolor (puma) [GN:pcoo]
Gene
112865200  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
112862304  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
112851732  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
112869538  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
112866328  PEX1; peroxisome biogenesis factor 1 [KO:K13338]
112862192  PEX6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
112867580  PEX26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
112862078  PEX7; peroxisomal biogenesis factor 7 [KO:K13341]
112850420  PEX5L; PEX5-related protein isoform X1 [KO:K13342]
112867895  PEX5; peroxisomal biogenesis factor 5 [KO:K13342]
112848882  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
112869215  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
112854569  PEX12; peroxisome assembly protein 12 [KO:K13345]
112848443  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
112859455  PEX2; peroxisome biogenesis factor 2 isoform X1 [KO:K06664]
112856297  PXMP2; peroxisomal membrane protein 2 [KO:K13347]
112864198  MPV17; protein Mpv17 [KO:K13348]
112853024  MPV17L2; mpv17-like protein 2 [KO:K13348]
112853340  MPV17L; mpv17-like protein [KO:K13349]
112869258  PXMP4; peroxisomal membrane protein 4 [KO:K13350]
112856329  PEX11A; peroxisomal membrane protein 11A isoform X1 [KO:K13351]
112870189  PEX11B; peroxisomal membrane protein 11B isoform X1 [KO:K13352]
112852621  PEX11G; peroxisomal membrane protein 11C isoform X1 [KO:K13353]
112863590  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
112849332  HACL1; 2-hydroxyacyl-CoA lyase 1 isoform X1 [KO:K12261] [EC:4.1.2.63]
112860272  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
112867296  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
112864715  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
112858456  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
112852623  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
112861741  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
112871902  SCP2; non-specific lipid-transfer protein [KO:K08764] [EC:2.3.1.176]
112850975  acyl-coenzyme A amino acid N-acyltransferase 2-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
112860692  BAAT; bile acid-CoA:amino acid N-acyltransferase [KO:K00659] [EC:2.3.1.65 3.1.2.2]
112850204  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
112849652  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal isoform X1 [KO:K07513] [EC:2.3.1.16]
112860147  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [KO:K13237] [EC:1.3.1.124]
112851292  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
112871020  ABCD1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
112867614  ABCD2; LOW QUALITY PROTEIN: ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
112855121  ABCD4; LOW QUALITY PROTEIN: ATP-binding cassette sub-family D member 4 [KO:K05678] [EC:7.6.2.8]
112855586  SLC27A2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
112861637  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
112870012  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
112871238  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
112848542  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
112854869  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
112848749  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
112853546  ECI2; enoyl-CoA delta isomerase 2, mitochondrial [KO:K13239] [EC:5.3.3.8]
112857486  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
112861309  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
112854646  NUDT13; nucleoside diphosphate-linked moiety X motif 13 isoform X1 [KO:K03426] [EC:3.6.1.22]
112851245  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
112869153  ACOT8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
112849978  CRAT; carnitine O-acetyltransferase [KO:K00624] [EC:2.3.1.7]
112866559  CROT; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
112857480  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
112851562  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
112871988  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
112866150  FAR1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
112867377  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
112870449  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
112851747  PMVK; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
112867705  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
112870453  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
112862506  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
112855372  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
112848784  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
112854712  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
112854083  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
112862277  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
112869296  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
112848517  HAO2; hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
112865557  CAT; catalase [KO:K03781] [EC:1.11.1.6]
112849351  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
112862357  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
112855216  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
112865148  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
112858307  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
112866316  GSTK1; glutathione S-transferase kappa 1 isoform X1 [KO:K13299] [EC:2.5.1.18]
112864113  XDH; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
112854975  dehydrogenase/reductase SDR family member 4-like isoform X1 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
pcoo00071  Fatty acid degradation
pcoo00120  Primary bile acid biosynthesis
pcoo00230  Purine metabolism
pcoo00564  Glycerophospholipid metabolism
pcoo00565  Ether lipid metabolism
pcoo00830  Retinol metabolism
pcoo00900  Terpenoid backbone biosynthesis
pcoo03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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