KEGG   PATHWAY: pflv00270
Entry
pflv00270                   Pathway                                
Name
Cysteine and methionine metabolism - Perca flavescens (yellow perch)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
pflv00270  Cysteine and methionine metabolism
pflv00270

Module
pflv_M00034  Methionine salvage pathway [PATH:pflv00270]
pflv_M00035  Methionine degradation [PATH:pflv00270]
pflv_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pflv00270]
Other DBs
GO: 0006534 0006555
Organism
Perca flavescens (yellow perch) [GN:pflv]
Gene
114561471  cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
114570879  kyat1; kynurenine--oxoglutarate transaminase 1 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
114561511  kyat3; kynurenine--oxoglutarate transaminase 3 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
114563635  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
114551178  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
114570759  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
114555694  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
114555876  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
114555939  betaine--homocysteine S-methyltransferase 1-like isoform X1 [KO:K00544] [EC:2.1.1.5]
114561289  uncharacterized protein LOC114561289 [KO:K00547] [EC:2.1.1.10]
114547940  mtr; methionine synthase [KO:K00548] [EC:2.1.1.13]
114566678  mat2b; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
114571337  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
114571074  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
114548403  S-adenosylmethionine synthase-like isoform X1 [KO:K00789] [EC:2.5.1.6]
114572546  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
114556023  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
114550469  methionine adenosyltransferase 2 subunit beta-like [KO:K00789] [EC:2.5.1.6]
114573211  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
114558998  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
114566513  sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
114567491  mtap; S-methyl-5'-thioadenosine phosphorylase isoform X1 [KO:K00772] [EC:2.4.2.28]
114563527  lacc1; laccase domain-containing protein 1 isoform X1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
114545950  mri1; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
114559306  apip; methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
114570998  enoph1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
114546434  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
114559594  tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
114552578  il4i1; L-amino-acid oxidase [KO:K03334] [EC:1.4.3.2]
114545909  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
114545953  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
114546186  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
114546189  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
114546190  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
114546191  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
114546486  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
114569839  dnmt1; DNA (cytosine-5)-methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
114546528  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
114573320  LOW QUALITY PROTEIN: DNA (cytosine-5)-methyltransferase 3A-like [KO:K17398] [EC:2.1.1.37]
114559104  uncharacterized protein LOC114559104 isoform X1 [KO:K17399] [EC:2.1.1.37]
114558621  uncharacterized protein LOC114558621 [KO:K17399] [EC:2.1.1.37]
114559105  DNA (cytosine-5)-methyltransferase 3B-like isoform X1 [KO:K17399] [EC:2.1.1.37]
114558715  ahcyl1; S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
114560089  putative adenosylhomocysteinase 3 [KO:K01251] [EC:3.13.2.1]
114554126  S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
114554515  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
114550399  ahcyl2; adenosylhomocysteinase 3 [KO:K01251] [EC:3.13.2.1]
114569113  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
114550198  bcat1; branched-chain-amino-acid aminotransferase, cytosolic isoform X1 [KO:K00826] [EC:2.6.1.42]
114571143  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial isoform X1 [KO:K00827] [EC:2.6.1.44 2.6.1.40]
114572002  gclc; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
114561272  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
114558807  gss; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
114555847  cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
114571840  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
114572695  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
114556412  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
114558307  got2; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
114545357  mpst; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
114569816  tst; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
114559658  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
114559878  L-lactate dehydrogenase C chain [KO:K00016] [EC:1.1.1.27]
114549906  L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
114566991  mdh1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
114571688  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
114556749  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
114546700  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
114555846  sds; L-serine dehydratase/L-threonine deaminase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
114563719  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
114555568  psat1; phosphoserine aminotransferase isoform X1 [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
pflv00010  Glycolysis / Gluconeogenesis
pflv00250  Alanine, aspartate and glutamate metabolism
pflv00260  Glycine, serine and threonine metabolism
pflv00290  Valine, leucine and isoleucine biosynthesis
pflv00430  Taurine and hypotaurine metabolism
pflv00480  Glutathione metabolism
pflv00620  Pyruvate metabolism
pflv00640  Propanoate metabolism
pflv00770  Pantothenate and CoA biosynthesis
pflv00900  Terpenoid backbone biosynthesis
pflv00920  Sulfur metabolism
KO pathway
ko00270   
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