KEGG   PATHWAY: pgr03018
Entry
pgr03018                    Pathway                                
Name
RNA degradation - Puccinia graminis
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pgr03018  RNA degradation
pgr03018

Other DBs
GO: 0006401
Organism
Puccinia graminis [GN:pgr]
Gene
PGTG_06620  hypothetical protein [KO:K12584] [EC:3.6.1.59]
PGTG_13048  hypothetical protein [KO:K07573]
PGTG_18773  hypothetical protein [KO:K07573]
PGTG_08376  exosome complex component RRP4 [KO:K03679]
PGTG_11688  hypothetical protein [KO:K12586]
PGTG_10390  hypothetical protein [KO:K12587]
PGTG_09713  hypothetical protein [KO:K12589]
PGTG_00403  hypothetical protein [KO:K11600]
PGTG_05411  hypothetical protein [KO:K12590]
PGTG_12810  hypothetical protein [KO:K12590]
PGTG_11465  exosome complex component RRP45 [KO:K03678]
PGTG_01296  hypothetical protein [KO:K03514] [EC:2.7.7.19]
PGTG_13936  hypothetical protein [KO:K12597]
PGTG_11325  hypothetical protein [KO:K12598] [EC:5.6.2.6]
PGTG_19883  hypothetical protein [KO:K12598] [EC:5.6.2.6]
PGTG_07821  hypothetical protein [KO:K12599] [EC:5.6.2.6]
PGTG_14344  hypothetical protein [KO:K12600]
PGTG_16274  hypothetical protein [KO:K12603] [EC:3.1.13.4]
PGTG_06508  hypothetical protein [KO:K12604]
PGTG_00597  hypothetical protein [KO:K12605]
PGTG_22510  hypothetical protein [KO:K12580]
PGTG_08172  hypothetical protein [KO:K10643] [EC:2.3.2.27]
PGTG_10582  hypothetical protein [KO:K12581]
PGTG_03830  hypothetical protein [KO:K12606]
PGTG_19531  hypothetical protein [KO:K12606]
PGTG_07187  hypothetical protein [KO:K12608]
PGTG_08802  hypothetical protein [KO:K12609]
PGTG_10266  hypothetical protein [KO:K13126]
PGTG_15382  hypothetical protein [KO:K13126]
PGTG_13804  hypothetical protein [KO:K13126]
PGTG_06528  hypothetical protein [KO:K13126]
PGTG_06529  hypothetical protein [KO:K13126]
PGTG_17024  hypothetical protein [KO:K12571] [EC:3.1.13.4]
PGTG_04951  hypothetical protein [KO:K12572]
PGTG_03310  hypothetical protein [KO:K12613] [EC:3.6.1.62]
PGTG_02128  hypothetical protein [KO:K12614] [EC:5.6.2.7]
PGTG_04057  hypothetical protein [KO:K12617]
PGTG_05555  hypothetical protein [KO:K12618] [EC:3.1.13.-]
PGTG_05665  hypothetical protein [KO:K12619] [EC:3.1.13.-]
PGTG_05053  hypothetical protein [KO:K12620]
PGTG_15942  U6 snRNA-associated Sm-like protein LSm2 [KO:K12621]
PGTG_07269  U6 snRNA-associated Sm-like protein LSm3 [KO:K12622]
PGTG_15117  hypothetical protein [KO:K12623]
PGTG_07784  U6 snRNA-associated Sm-like protein LSm5 [KO:K12624]
PGTG_00170  small nuclear ribonucleoprotein [KO:K12625]
PGTG_10106  small nuclear ribonucleoprotein [KO:K12626]
PGTG_20884  hypothetical protein [KO:K12627]
PGTG_14903  enolase [KO:K01689] [EC:4.2.1.11]
PGTG_02240  hypothetical protein [KO:K03654] [EC:5.6.2.4]
PGTG_18702  hypothetical protein [KO:K03654] [EC:5.6.2.4]
PGTG_04598  hypothetical protein [KO:K03654] [EC:5.6.2.4]
PGTG_18027  hypothetical protein [KO:K03654] [EC:5.6.2.4]
PGTG_05736  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
PGTG_01844  hsp70-like protein [KO:K04043]
PGTG_15442  heat shock protein 60 [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
pgr03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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