KEGG   PATHWAY: pon04146
Entry
pon04146                    Pathway                                
Name
Peroxisome - Pongo abelii (Sumatran orangutan)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
pon04146  Peroxisome
pon04146

Other DBs
GO: 0005777
Organism
Pongo abelii (Sumatran orangutan) [GN:pon]
Gene
100433442  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
100440084  PEX3; peroxisomal biogenesis factor 3 isoform X1 [KO:K13336]
100173241  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
100172102  ABCD3; ATP-binding cassette sub-family D member 3 [KO:K05677] [EC:7.6.2.4]
100460631  PEX1; peroxisomal ATPase PEX1 isoform X1 [KO:K13338]
100432126  PEX6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
100454677  PEX7; peroxisomal biogenesis factor 7 isoform X1 [KO:K13341]
100459564  PEX5; peroxisomal biogenesis factor 5 isoform X2 [KO:K13342]
100432217  PEX5L; PEX5-related protein isoform X2 [KO:K13342]
100460830  PEX14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
100435355  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
100432575  PEX12; peroxisome assembly protein 12 [KO:K13345]
100445339  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
100457741  PXMP2; peroxisomal membrane protein 2 isoform X1 [KO:K13347]
100442722  MPV17; protein Mpv17 isoform X1 [KO:K13348]
100436598  MPV17L2; mpv17-like protein 2 [KO:K13348]
100436231  PXMP4; peroxisomal membrane protein 4 isoform X1 [KO:K13350]
100438550  PEX11A; peroxisomal membrane protein 11A isoform X2 [KO:K13351]
100174204  PEX11B; peroxisomal membrane protein 11B [KO:K13352]
100452539  PEX11G; peroxisomal membrane protein 11C isoform X4 [KO:K13353]
100440680  SLC25A17; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
100457302  HACL1; 2-hydroxyacyl-CoA lyase 1 isoform X1 [KO:K12261] [EC:4.1.2.63]
100171562  AMACR; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
100172283  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 [KO:K00232] [EC:1.3.3.6]
100172575  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
100173031  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
100448539  HSD17B4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
100173072  SCP2; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
100431907  BAAT; bile acid-CoA:amino acid N-acyltransferase [KO:K00659] [EC:2.3.1.65 3.1.2.2]
100461881  LOW QUALITY PROTEIN: acyl-coenzyme A amino acid N-acyltransferase 2-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
100174685  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
100461213  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
100172330  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] [KO:K13237] [EC:1.3.1.124]
100171488  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial precursor [KO:K12663] [EC:5.3.3.21]
100449591  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
100441172  ABCD1; ATP-binding cassette sub-family D member 1 isoform X1 [KO:K05675] [EC:7.6.2.4]
100433322  ABCD2; ATP-binding cassette sub-family D member 2 isoform X1 [KO:K05676] [EC:7.6.2.4]
100450774  ABCD4; lysosomal cobalamin transporter ABCD4 isoform X3 [KO:K05678] [EC:7.6.2.8]
100435075  SLC27A2; long-chain fatty acid transport protein 2 isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
100172543  ACSL1; long-chain-fatty-acid--CoA ligase 1 [KO:K01897] [EC:6.2.1.3]
100174659  ACSL3; fatty acid CoA ligase Acsl3 [KO:K01897] [EC:6.2.1.3]
100434441  ACSL5; long-chain-fatty-acid--CoA ligase 5 isoform X1 [KO:K01897] [EC:6.2.1.3]
100462347  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X2 [KO:K01897] [EC:6.2.1.3]
100174357  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
100459134  ECI2; enoyl-CoA delta isomerase 2 isoform X1 [KO:K13239] [EC:5.3.3.8]
100444901  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 isoform X1 [KO:K17879] [EC:3.6.1.77]
100172011  NUDT12; NAD-capped RNA hydrolase NUDT12 [KO:K03426] [EC:3.6.1.22]
100172257  NUDT13; NAD(P)H pyrophosphatase NUDT13, mitochondrial [KO:K03426] [EC:3.6.1.22]
100435234  NUDT19; acyl-coenzyme A diphosphatase NUDT19 [KO:K13355] [EC:3.6.1.77]
100173249  ACOT8; acyl-coenzyme A thioesterase 8 isoform X1 [KO:K11992] [EC:3.1.2.27]
100459793  CRAT; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
100452848  CROT; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
100431443  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
100172931  GNPAT; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
100431719  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X2 [KO:K00803] [EC:2.5.1.26]
100444768  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
100173178  FAR1; fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
100451511  MVK; mevalonate kinase isoform X11 [KO:K00869] [EC:2.7.1.36]
100455820  PMVK; LOW QUALITY PROTEIN: phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
100171897  AGXT; alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
100435642  DDO; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
100441867  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
100171634  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100456760  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
100447841  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X6 [KO:K00308] [EC:1.5.3.13]
100172798  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
100174514  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial precursor [KO:K01640] [EC:4.1.3.4]
100461359  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X4 [KO:K01640] [EC:4.1.3.4]
100461220  HAO1; 2-Hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
100453384  HAO2; 2-Hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
100171588  CAT; catalase [KO:K03781] [EC:1.11.1.6]
100451000  PRDX5; peroxiredoxin-5, mitochondrial isoform X1 [KO:K11187] [EC:1.11.1.24]
100172349  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
100174061  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
100436584  NOS2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
100455467  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
100172736  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
100171904  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
100454383  XDH; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
100172190  DHRS4; dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
100445181  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
pon00071  Fatty acid degradation
pon00120  Primary bile acid biosynthesis
pon00230  Purine metabolism
pon00564  Glycerophospholipid metabolism
pon00565  Ether lipid metabolism
pon00830  Retinol metabolism
pon00900  Terpenoid backbone biosynthesis
pon03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

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