KEGG   PATHWAY: pps04146
Entry
pps04146                    Pathway                                
Name
Peroxisome - Pan paniscus (bonobo)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
pps04146  Peroxisome
pps04146

Other DBs
GO: 0005777
Organism
Pan paniscus (bonobo) [GN:pps]
Gene
100982684  PEX16; peroxisomal biogenesis factor 16 isoform X2 [KO:K13335]
100976411  PEX3; peroxisomal biogenesis factor 3 isoform X1 [KO:K13336]
103785020  PEX19; peroxisomal biogenesis factor 19 isoform X1 [KO:K13337]
100987965  ABCD3; ATP-binding cassette sub-family D member 3 isoform X2 [KO:K05677] [EC:7.6.2.4]
100982929  PEX1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
100992879  PEX6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
100986636  PEX26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
100993434  PEX7; peroxisomal biogenesis factor 7 isoform X2 [KO:K13341]
100988597  PEX5; peroxisomal biogenesis factor 5 isoform X4 [KO:K13342]
100970309  PEX5L; PEX5-related protein isoform X3 [KO:K13342]
100983449  PEX14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
100968581  PEX13; peroxisome biogenesis factor 13 isoform X1 [KO:K13344]
100971014  PEX12; peroxisome assembly protein 12 [KO:K13345]
100989009  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
100995509  PXMP2; peroxisomal membrane protein 2 [KO:K13347]
100979034  MPV17L2; mpv17-like protein 2 [KO:K13348]
100993666  MPV17; protein Mpv17 isoform X1 [KO:K13348]
100992437  MPV17L; mpv17-like protein isoform X1 [KO:K13349]
100995543  LOW QUALITY PROTEIN: mpv17-like protein [KO:K13349]
100994849  mpv17-like protein isoform X1 [KO:K13349]
100971111  PXMP4; peroxisomal membrane protein 4 isoform X1 [KO:K13350]
100975904  PEX11A; peroxisomal membrane protein 11A isoform X1 [KO:K13351]
100994986  PEX11B; peroxisomal membrane protein 11B isoform X1 [KO:K13352]
100986497  PEX11G; peroxisomal membrane protein 11C isoform X1 [KO:K13353]
100979010  SLC25A17; peroxisomal membrane protein PMP34 [KO:K13354]
100982158  HACL1; 2-hydroxyacyl-CoA lyase 1 isoform X3 [KO:K12261] [EC:4.1.2.63]
100987911  AMACR; alpha-methylacyl-CoA racemase isoform X1 [KO:K01796] [EC:5.1.99.4]
100983012  PHYH; phytanoyl-CoA dioxygenase, peroxisomal isoform X1 [KO:K00477] [EC:1.14.11.18]
100973171  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 isoform X1 [KO:K00232] [EC:1.3.3.6]
100984758  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 isoform X3 [KO:K00232] [EC:1.3.3.6]
100987633  ACOX2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
100981028  HSD17B4; peroxisomal multifunctional enzyme type 2 isoform X1 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
100986541  SCP2; non-specific lipid-transfer protein isoform X1 [KO:K08764] [EC:2.3.1.176]
100992429  BAAT; bile acid-CoA:amino acid N-acyltransferase isoform X1 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
100985141  EHHADH; peroxisomal bifunctional enzyme isoform X1 [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
100994212  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal isoform X1 [KO:K07513] [EC:2.3.1.16]
100989760  DECR2; peroxisomal 2,4-dienoyl-CoA reductase isoform X1 [KO:K13237] [EC:1.3.1.124]
100980944  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
117976943  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like [KO:K12663] [EC:5.3.3.21]
100974677  ABCD1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
100989757  ABCD2; ATP-binding cassette sub-family D member 2 isoform X1 [KO:K05676] [EC:7.6.2.4]
100978957  ABCD4; ATP-binding cassette sub-family D member 4 isoform X1 [KO:K05678] [EC:7.6.2.8]
100968109  SLC27A2; very long-chain acyl-CoA synthetase isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
100985252  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X4 [KO:K01897] [EC:6.2.1.3]
100976380  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
100982029  ACSL5; long-chain-fatty-acid--CoA ligase 5 isoform X1 [KO:K01897] [EC:6.2.1.3]
100967641  ACSL6; long-chain-fatty-acid--CoA ligase 6 isoform X1 [KO:K01897] [EC:6.2.1.3]
100977696  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
100978479  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
100974366  ECI2; enoyl-CoA delta isomerase 2, mitochondrial isoform X1 [KO:K13239] [EC:5.3.3.8]
100995085  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 isoform X2 [KO:K17879] [EC:3.6.1.-]
100968774  NUDT12; peroxisomal NADH pyrophosphatase NUDT12 isoform X2 [KO:K03426] [EC:3.6.1.22]
100992641  NUDT13; nucleoside diphosphate-linked moiety X motif 13 isoform X1 [KO:K03426] [EC:3.6.1.22]
100986000  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.-]
100968654  ACOT8; acyl-coenzyme A thioesterase 8 isoform X1 [KO:K11992] [EC:3.1.2.27]
100983113  CRAT; carnitine O-acetyltransferase isoform X2 [KO:K00624] [EC:2.3.1.7]
100977046  CROT; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
100981671  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
100994430  GNPAT; dihydroxyacetone phosphate acyltransferase [KO:K00649] [EC:2.3.1.42]
100984427  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1 [KO:K00803] [EC:2.5.1.26]
100978448  FAR2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
100970220  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
100983975  MVK; mevalonate kinase isoform X1 [KO:K00869] [EC:2.7.1.36]
100995977  PMVK; phosphomevalonate kinase isoform X3 [KO:K13273] [EC:2.7.4.2]
100993087  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
100989465  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
100979735  DDO; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
100979264  IDH2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
100980780  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
100991166  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X2 [KO:K00308] [EC:1.5.3.13]
100992747  PIPOX; peroxisomal sarcosine oxidase isoform X1 [KO:K00306] [EC:1.5.3.1 1.5.3.7]
100990466  HMGCLL1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1 [KO:K01640] [EC:4.1.3.4]
100987057  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
100981574  HAO2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
100968377  HAO1; hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
100994018  CAT; catalase [KO:K03781] [EC:1.11.1.6]
100989671  PRDX5; peroxiredoxin-5, mitochondrial isoform X1 [KO:K11187] [EC:1.11.1.24]
100970531  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
100989293  superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
100990423  SOD2; superoxide dismutase [Mn], mitochondrial isoform X3 [KO:K04564] [EC:1.15.1.1]
100976546  NOS2; nitric oxide synthase, inducible isoform X1 [KO:K13241] [EC:1.14.13.39]
100994710  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
100990932  EPHX2; bifunctional epoxide hydrolase 2 isoform X1 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
100984910  GSTK1; glutathione S-transferase kappa 1 isoform X2 [KO:K13299] [EC:2.5.1.18]
100986628  XDH; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
117975776  putative dehydrogenase/reductase SDR family member 4-like 1 [KO:K11147] [EC:1.1.-.-]
100974941  dehydrogenase/reductase SDR family member 4 isoform X1 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
pps00071  Fatty acid degradation
pps00120  Primary bile acid biosynthesis
pps00230  Purine metabolism
pps00564  Glycerophospholipid metabolism
pps00565  Ether lipid metabolism
pps00830  Retinol metabolism
pps00900  Terpenoid backbone biosynthesis
pps03320  PPAR signaling pathway
KO pathway
ko04146   
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