KEGG   PATHWAY: prob04146
Entry
prob04146                   Pathway                                
Name
Peroxisome - Phodopus roborovskii (desert hamster)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
prob04146  Peroxisome
prob04146

Other DBs
GO: 0005777
Organism
Phodopus roborovskii (desert hamster) [GN:prob]
Gene
127222225  Pex16; peroxisomal biogenesis factor 16 isoform X1 [KO:K13335]
127237777  Pex3; peroxisomal biogenesis factor 3 [KO:K13336]
127223602  Pex19; peroxisomal biogenesis factor 19 isoform X1 [KO:K13337]
127223076  Abcd3; ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
127216484  Pex1; peroxisomal ATPase PEX1 isoform X1 [KO:K13338]
127236655  Pex6; peroxisome biogenesis factor 6 [KO:K13339]
127236179  Pex26; peroxisome assembly protein 26 [KO:K13340]
127215050  Pex7; peroxisomal biogenesis factor 7 [KO:K13341]
127215547  peroxisomal targeting signal 1 receptor isoform X1 [KO:K13342]
127223337  Pex5l; PEX5-related protein [KO:K13342]
127212871  Pex5; LOW QUALITY PROTEIN: peroxisomal biogenesis factor 5 [KO:K13342]
127213454  Pex14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
127233852  Pex13; peroxisome biogenesis factor 13 [KO:K13344]
127218963  Pex12; peroxisome assembly protein 12 [KO:K13345]
127213401  Pex10; peroxisome biogenesis factor 10 [KO:K13346]
127231145  Pex2; peroxisome biogenesis factor 2 [KO:K06664]
127215914  Pxmp2; peroxisomal membrane protein 2 [KO:K13347]
127217213  Mpv17l2; mpv17-like protein 2 [KO:K13348]
127220090  Mpv17; protein Mpv17 isoform X1 [KO:K13348]
127238218  Mpv17l; mpv17-like protein [KO:K13349]
127228164  Pxmp4; peroxisomal membrane protein 4 [KO:K13350]
127238163  Pex11a; peroxisomal membrane protein 11A [KO:K13351]
127232745  Pex11b; peroxisomal membrane protein 11B isoform X1 [KO:K13352]
127237168  Pex11g; peroxisomal membrane protein 11C isoform X1 [KO:K13353]
127225825  Slc25a17; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
127217007  Hacl1; 2-hydroxyacyl-CoA lyase 1 isoform X1 [KO:K12261] [EC:4.1.2.63]
127220645  Amacr; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
127237502  Phyh; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
127219391  Acox1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
127233660  Acox3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
127238208  Acox2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
127234029  Hsd17b4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
127225126  Scp2; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
127224676  bile acid-CoA:amino acid N-acyltransferase [KO:K00659] [EC:2.3.1.65 3.1.2.2]
127224678  acyl-coenzyme A amino acid N-acyltransferase 2 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
127226986  Ehhadh; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
127235072  LOW QUALITY PROTEIN: 3-ketoacyl-CoA thiolase B, peroxisomal-like [KO:K07513] [EC:2.3.1.16]
127235114  3-ketoacyl-CoA thiolase B, peroxisomal [KO:K07513] [EC:2.3.1.16]
127219483  Decr2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] [KO:K13237] [EC:1.3.1.124]
127238827  Ech1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [KO:K12663] [EC:5.3.3.21]
127217339  Abcd1; ATP-binding cassette sub-family D member 1 isoform X1 [KO:K05675] [EC:7.6.2.4]
127225975  Abcd2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
127230973  Abcd4; lysosomal cobalamin transporter ABCD4 [KO:K05678] [EC:7.6.2.8]
127221509  Slc27a2; long-chain fatty acid transport protein 2 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
127217133  Acsl4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
127219281  Acsl6; long-chain-fatty-acid--CoA ligase 6 [KO:K01897] [EC:6.2.1.3]
127226487  Acsl3; fatty acid CoA ligase Acsl3 [KO:K01897] [EC:6.2.1.3]
127220533  Acsl1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
127233565  Acsl5; long-chain-fatty-acid--CoA ligase 5 isoform X1 [KO:K01897] [EC:6.2.1.3]
127226417  Pecr; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
127229344  Eci2; enoyl-CoA delta isomerase 2 isoform X1 [KO:K13239] [EC:5.3.3.8]
127229345  enoyl-CoA delta isomerase 2-like [KO:K13239] [EC:5.3.3.8]
127234558  Nudt7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
127226748  Nudt12; NAD-capped RNA hydrolase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
127214124  Nudt13; NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X1 [KO:K03426] [EC:3.6.1.22]
127238691  Nudt19; acyl-coenzyme A diphosphatase NUDT19 [KO:K13355] [EC:3.6.1.77]
127223747  Acot8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
127222722  Crat; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
127214205  Crot; peroxisomal carnitine O-octanoyltransferase [KO:K05940] [EC:2.3.1.137]
127234414  Mlycd; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
127234637  Gnpat; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
127222387  Agps; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
127228217  Far1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
127213128  Far2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
127215962  Mvk; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
127232759  Pmvk; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
127226633  Agxt; alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
127216102  Dao; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
127215160  Ddo; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
127238160  Idh2; LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
127226387  Idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
127228505  Paox; peroxisomal N(1)-acetyl-spermine/spermidine oxidase [KO:K00308] [EC:1.5.3.13]
127218865  Pipox; peroxisomal sarcosine oxidase isoform X1 [KO:K00306] [EC:1.5.3.1 1.5.3.7]
127231990  Hmgcll1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
127213283  Hmgcl; hydroxymethylglutaryl-CoA lyase, mitochondrial [KO:K01640] [EC:4.1.3.4]
127232872  Hao2; 2-Hydroxyacid oxidase 2 [KO:K11517] [EC:1.1.3.15]
127221394  Hao1; 2-Hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
127222174  Cat; catalase [KO:K03781] [EC:1.11.1.6]
127228767  Prdx5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
127227503  Sod1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
127237640  Sod2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
127218827  Nos2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
127225228  Prdx1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
127214613  peroxiredoxin-1-like [KO:K13279] [EC:1.11.1.24]
127230245  Ephx2; bifunctional epoxide hydrolase 2 isoform X1 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
127214267  Gstk1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
127220117  Xdh; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
127230387  dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
prob00071  Fatty acid degradation
prob00120  Primary bile acid biosynthesis
prob00230  Purine metabolism
prob00564  Glycerophospholipid metabolism
prob00565  Ether lipid metabolism
prob00830  Retinol metabolism
prob00900  Terpenoid backbone biosynthesis
prob03320  PPAR signaling pathway
KO pathway
ko04146   
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