KEGG   PATHWAY: pvp00270
Entry
pvp00270                    Pathway                                
Name
Cysteine and methionine metabolism - Pteropus vampyrus (large flying fox)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
pvp00270  Cysteine and methionine metabolism
pvp00270

Module
pvp_M00034  Methionine salvage pathway [PATH:pvp00270]
pvp_M00035  Methionine degradation [PATH:pvp00270]
pvp_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:pvp00270]
Other DBs
GO: 0006534 0006555
Organism
Pteropus vampyrus (large flying fox) [GN:pvp]
Gene
105295875  CTH; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
105289092  KYAT3; kynurenine--oxoglutarate transaminase 3 isoform X3 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
105294800  KYAT1; kynurenine--oxoglutarate transaminase 1 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
105305392  CBS; cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
105304644  BHMT; betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
105303574  BHMT2; S-methylmethionine--homocysteine S-methyltransferase BHMT2 [KO:K00547] [EC:2.1.1.10]
105302733  MTR; methionine synthase [KO:K00548] [EC:2.1.1.13]
105288976  MAT1A; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
105289885  MAT2B; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
105298517  MAT2A; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
105295231  AMD1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
105294375  SRM; spermidine synthase [KO:K00797] [EC:2.5.1.16]
105304389  SMS; spermine synthase [KO:K00802] [EC:2.5.1.22]
105298450  MTAP; S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
105298470  LACC1; laccase domain-containing protein 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
105307187  MRI1; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
105289972  APIP; methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
105292394  ENOPH1; LOW QUALITY PROTEIN: enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
105301660  ADI1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
105305841  TAT; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
105304057  LOW QUALITY PROTEIN: L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
105301784  IL4I1; L-amino-acid oxidase [KO:K03334] [EC:1.4.3.2]
105288454  GNMT; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
105305586  DNMT1; DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
105289809  DNMT3A; DNA (cytosine-5)-methyltransferase 3A [KO:K17398] [EC:2.1.1.37]
105304323  DNMT3B; DNA (cytosine-5)-methyltransferase 3B [KO:K17399] [EC:2.1.1.37]
105304288  AHCY; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
105297137  AHCYL1; S-adenosylhomocysteine hydrolase-like protein 1 isoform X5 [KO:K01251] [EC:3.13.2.1]
105290239  AHCYL2; adenosylhomocysteinase 3 [KO:K01251] [EC:3.13.2.1]
105294110  BCAT1; branched-chain-amino-acid aminotransferase, cytosolic isoform X1 [KO:K00826] [EC:2.6.1.42]
105310860  branched-chain-amino-acid aminotransferase, mitochondrial-like [KO:K00826] [EC:2.6.1.42]
105301798  BCAT2; branched-chain-amino-acid aminotransferase, mitochondrial [KO:K00826] [EC:2.6.1.42]
105305880  AGXT2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
105304805  GCLC; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
105289164  GCLM; glutamate--cysteine ligase regulatory subunit [KO:K11205]
105304301  GSS; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
105290849  CDO1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
105304607  GOT1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
105300920  GOT1L1; putative aspartate aminotransferase, cytoplasmic 2 [KO:K14454] [EC:2.6.1.1]
105289853  GOT2; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
105288308  TST; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
105311425  MPST; 3-mercaptopyruvate sulfurtransferase isoform X2 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
105303903  LDHA; L-lactate dehydrogenase A chain isoform X1 [KO:K00016] [EC:1.1.1.27]
105303904  L-lactate dehydrogenase C chain [KO:K00016] [EC:1.1.1.27]
105306536  LDHB; L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
105293843  L-lactate dehydrogenase A-like 6B [KO:K00016] [EC:1.1.1.27]
105306699  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105299694  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105289244  SDS; L-serine dehydratase/L-threonine deaminase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
105289245  SDSL; serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
105296345  PHGDH; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
105302456  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
pvp00010  Glycolysis / Gluconeogenesis
pvp00250  Alanine, aspartate and glutamate metabolism
pvp00260  Glycine, serine and threonine metabolism
pvp00290  Valine, leucine and isoleucine biosynthesis
pvp00430  Taurine and hypotaurine metabolism
pvp00480  Glutathione metabolism
pvp00620  Pyruvate metabolism
pvp00640  Propanoate metabolism
pvp00770  Pantothenate and CoA biosynthesis
pvp00900  Terpenoid backbone biosynthesis
pvp00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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