KEGG   PATHWAY: rcn00270
Entry
rcn00270                    Pathway                                
Name
Cysteine and methionine metabolism - Rosa chinensis (China rose)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
rcn00270  Cysteine and methionine metabolism
rcn00270

Module
rcn_M00021  Cysteine biosynthesis, serine => cysteine [PATH:rcn00270]
rcn_M00034  Methionine salvage pathway [PATH:rcn00270]
rcn_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:rcn00270]
Other DBs
GO: 0006534 0006555
Organism
Rosa chinensis (China rose) [GN:rcn]
Gene
112164725  serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
112183660  serine acetyltransferase 4 [KO:K00640] [EC:2.3.1.30]
112186447  serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
112190198  serine acetyltransferase 2 [KO:K00640] [EC:2.3.1.30]
112166248  cysteine synthase 2 [KO:K01738] [EC:2.5.1.47]
112191506  cysteine synthase [KO:K01738] [EC:2.5.1.47]
112200777  cysteine synthase [KO:K01738] [EC:2.5.1.47]
112191488  cysteine synthase isoform X1 [KO:K01738] [EC:2.5.1.47]
112193353  cysteine synthase isoform X1 [KO:K01738] [EC:2.5.1.47]
112193354  cysteine synthase [KO:K01738] [EC:2.5.1.47]
112193355  cysteine synthase isoform X1 [KO:K01738] [EC:2.5.1.47]
112194921  cysteine synthase isoform X3 [KO:K01738] [EC:2.5.1.47]
112192408  cysteine synthase isoform X1 [KO:K01738] [EC:2.5.1.47]
112192409  cysteine synthase isoform X2 [KO:K01738] [EC:2.5.1.47]
112192410  cysteine synthase isoform X1 [KO:K01738] [EC:2.5.1.47]
112192411  cysteine synthase [KO:K01738] [EC:2.5.1.47]
112197872  cysteine synthase, chloroplastic/chromoplastic [KO:K01738] [EC:2.5.1.47]
112181707  L-3-cyanoalanine synthase 2, mitochondrial [KO:K13034] [EC:2.5.1.47 4.4.1.9]
112172959  L-3-cyanoalanine synthase 2, mitochondrial isoform X1 [KO:K13034] [EC:2.5.1.47 4.4.1.9]
112186231  cystathionine beta-lyase, chloroplastic isoform X1 [KO:K01760] [EC:4.4.1.13]
112169970  homocysteine S-methyltransferase 2 isoform X1 [KO:K00547] [EC:2.1.1.10]
112197760  LOW QUALITY PROTEIN: homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
112197766  homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
112200358  homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
112197481  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
112198595  homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
112165795  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
112192108  5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
112192959  S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
112191563  S-adenosylmethionine synthase 4 [KO:K00789] [EC:2.5.1.6]
112194975  S-adenosylmethionine synthase 5 [KO:K00789] [EC:2.5.1.6]
112197040  S-adenosylmethionine synthase 5 [KO:K00789] [EC:2.5.1.6]
112185914  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
112200221  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
112197664  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
112180326  spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
112183532  spermine synthase [KO:K00797] [EC:2.5.1.16]
112200828  spermidine synthase [KO:K00797] [EC:2.5.1.16]
112180476  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
112193312  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
112174805  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01244] [EC:3.2.2.16]
112171939  methylthioribose kinase isoform X1 [KO:K00899] [EC:2.7.1.100]
112171940  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
112189893  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
112190691  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
112166229  LOW QUALITY PROTEIN: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
112200576  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
112200577  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
112200578  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 isoform X1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
112172636  methionine aminotransferase [KO:K23977] [EC:2.6.1.117]
112168180  probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
112189602  tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
112188947  nicotianamine aminotransferase 1 [KO:K00815] [EC:2.6.1.5]
112188948  nicotianamine aminotransferase 1 [KO:K00815] [EC:2.6.1.5]
112187238  aromatic aminotransferase ISS1 isoform X1 [KO:K00837] [EC:2.6.1.-]
112176950  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
112179548  DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [KO:K00558] [EC:2.1.1.37]
112185654  DNA (cytosine-5)-methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
112165730  DNA (cytosine-5)-methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
112199415  DNA (cytosine-5)-methyltransferase CMT3 isoform X1 [KO:K00558] [EC:2.1.1.37]
112197185  DNA (cytosine-5)-methyltransferase CMT3 isoform X1 [KO:K00558] [EC:2.1.1.37]
112187809  DNA (cytosine-5)-methyltransferase CMT3 [KO:K00558] [EC:2.1.1.37]
112191724  uncharacterized protein LOC112191724 [KO:K17398] [EC:2.1.1.37]
112196969  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
112180548  1-aminocyclopropane-1-carboxylate synthase [KO:K20772] [EC:4.4.1.14]
112182025  1-aminocyclopropane-1-carboxylate synthase 1 [KO:K20772] [EC:4.4.1.14]
112173847  1-aminocyclopropane-1-carboxylate synthase 3 [KO:K01762] [EC:4.4.1.14]
112189646  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
112189904  1-aminocyclopropane-1-carboxylate synthase [KO:K01762] [EC:4.4.1.14]
112189922  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
112184269  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
112173192  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
112190393  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
112202148  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
112187611  aspartokinase 2, chloroplastic isoform X1 [KO:K00928] [EC:2.7.2.4]
112197885  aspartokinase 1, chloroplastic [KO:K00928] [EC:2.7.2.4]
112174121  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic isoform X1 [KO:K12524] [EC:2.7.2.4 1.1.1.3]
112197024  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
112187617  cystathionine gamma-synthase 1, chloroplastic [KO:K01739] [EC:2.5.1.48]
112169927  branched-chain-amino-acid aminotransferase 6 isoform X1 [KO:K00826] [EC:2.6.1.42]
112172335  branched-chain-amino-acid aminotransferase 2, chloroplastic isoform X1 [KO:K00826] [EC:2.6.1.42]
112172336  branched-chain-amino-acid aminotransferase 5, chloroplastic [KO:K00826] [EC:2.6.1.42]
112173348  branched-chain-amino-acid aminotransferase 6 [KO:K00826] [EC:2.6.1.42]
112188804  branched-chain amino acid aminotransferase 2, chloroplastic [KO:K00826] [EC:2.6.1.42]
112192313  branched-chain-amino-acid aminotransferase 2, chloroplastic isoform X1 [KO:K00826] [EC:2.6.1.42]
112186512  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
112174473  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
112194838  alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
112176081  glutamate--cysteine ligase, chloroplastic [KO:K01919] [EC:6.3.2.2]
112192282  glutathione synthetase, chloroplastic [KO:K21456] [EC:6.3.2.3]
112169273  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
112169274  aspartate aminotransferase, cytoplasmic isoform X1 [KO:K14454] [EC:2.6.1.1]
112188006  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
112173781  aspartate aminotransferase, chloroplastic isoform X1 [KO:K00811] [EC:2.6.1.1]
112166857  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial [KO:K01011] [EC:2.8.1.1 2.8.1.2]
112166362  LOW QUALITY PROTEIN: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial [KO:K01011] [EC:2.8.1.1 2.8.1.2]
112175321  L-lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
112201064  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
112199053  L-lactate dehydrogenase A [KO:K00016] [EC:1.1.1.27]
112175336  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [KO:K05396] [EC:4.4.1.15]
112196633  D-cysteine desulfhydrase 2, mitochondrial isoform X2 [KO:K05396] [EC:4.4.1.15]
112191781  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
112203626  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
112192553  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
112203324  LOW QUALITY PROTEIN: probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
112198066  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
112201569  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
112170475  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
112177143  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
112188803  malate dehydrogenase, glyoxysomal isoform X1 [KO:K00026] [EC:1.1.1.37]
112202187  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
112193107  S-sulfo-L-cysteine synthase (O-acetyl-L-serine-dependent), chloroplastic isoform X1 [KO:K22846] [EC:2.5.1.144]
112170484  D-3-phosphoglycerate dehydrogenase 1, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
112190974  D-3-phosphoglycerate dehydrogenase 2, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
112187688  phosphoserine aminotransferase 1, chloroplastic [KO:K00831] [EC:2.6.1.52]
112194689  phosphoserine aminotransferase 2, chloroplastic-like [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
rcn00010  Glycolysis / Gluconeogenesis
rcn00250  Alanine, aspartate and glutamate metabolism
rcn00260  Glycine, serine and threonine metabolism
rcn00290  Valine, leucine and isoleucine biosynthesis
rcn00430  Taurine and hypotaurine metabolism
rcn00480  Glutathione metabolism
rcn00620  Pyruvate metabolism
rcn00640  Propanoate metabolism
rcn00770  Pantothenate and CoA biosynthesis
rcn00900  Terpenoid backbone biosynthesis
rcn00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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