KEGG   PATHWAY: rsz00230
Entry
rsz00230                    Pathway                                
Name
Purine metabolism - Raphanus sativus (radish)
Class
Metabolism; Nucleotide metabolism
Pathway map
rsz00230  Purine metabolism
rsz00230

Module
rsz_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:rsz00230]
rsz_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:rsz00230]
rsz_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:rsz00230]
rsz_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:rsz00230]
rsz_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:rsz00230]
Other DBs
GO: 0006163 0042278
Organism
Raphanus sativus (radish) [GN:rsz]
Gene
108839677  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase isoform X1 [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
108827373  nudix hydrolase 2-like [KO:K26956] [EC:3.6.1.13 3.6.1.22]
108854995  nudix hydrolase 7 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
108829206  nudix hydrolase 10 isoform X1 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
108811925  nudix hydrolase 2 isoform X1 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
108819200  nudix hydrolase 7 isoform X1 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
108832805  nudix hydrolase 2 [KO:K26956] [EC:3.6.1.13 3.6.1.22]
108806323  nudix hydrolase 23, chloroplastic isoform X1 [KO:K18453] [EC:3.6.1.13 3.6.1.18]
108825631  nudix hydrolase 14, chloroplastic [KO:K18447] [EC:3.6.1.21]
108813230  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
108822590  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
108828634  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
108822094  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
130504324  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
130506558  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
130506835  probable phosphoglucomutase, cytoplasmic 1 [KO:K01835] [EC:5.4.2.2]
108848881  ribose-phosphate pyrophosphokinase 5, chloroplastic [KO:K00948] [EC:2.7.6.1]
108839148  ribose-phosphate pyrophosphokinase 2, chloroplastic [KO:K00948] [EC:2.7.6.1]
108806876  ribose-phosphate pyrophosphokinase 1, chloroplastic [KO:K00948] [EC:2.7.6.1]
108857319  ribose-phosphate pyrophosphokinase 2, chloroplastic [KO:K00948] [EC:2.7.6.1]
108842142  amidophosphoribosyltransferase 3, chloroplastic [KO:K00764] [EC:2.4.2.14]
108842243  amidophosphoribosyltransferase 2, chloroplastic [KO:K00764] [EC:2.4.2.14]
108805814  amidophosphoribosyltransferase 1, chloroplastic [KO:K00764] [EC:2.4.2.14]
130503194  amidophosphoribosyltransferase 2, chloroplastic [KO:K00764] [EC:2.4.2.14]
130508388  amidophosphoribosyltransferase 2, chloroplastic [KO:K00764] [EC:2.4.2.14]
108805650  phosphoribosylamine--glycine ligase, chloroplastic [KO:K01945] [EC:6.3.4.13]
108859095  phosphoribosylamine--glycine ligase, chloroplastic [KO:K01945] [EC:6.3.4.13]
130498307  phosphoribosylamine--glycine ligase, chloroplastic [KO:K01945] [EC:6.3.4.13]
130509841  phosphoribosylamine--glycine ligase, chloroplastic-like [KO:K01945] [EC:6.3.4.13]
108862672  phosphoribosylglycinamide formyltransferase, chloroplastic [KO:K00601] [EC:2.1.2.2]
108817003  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
108862296  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic [KO:K01933] [EC:6.3.3.1]
108836334  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic [KO:K01933] [EC:6.3.3.1]
108830244  phosphoribosylaminoimidazole carboxylase, chloroplastic [KO:K11808] [EC:4.1.1.21]
108844546  phosphoribosylaminoimidazole carboxylase, chloroplastic-like [KO:K11808] [EC:4.1.1.21]
108829106  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [KO:K01923] [EC:6.3.2.6]
108818818  uncharacterized protein LOC108818818 [KO:K01756] [EC:4.3.2.2]
108826298  uncharacterized protein LOC108826298 [KO:K01756] [EC:4.3.2.2]
108808752  uncharacterized protein LOC108808752 isoform X1 [KO:K00602] [EC:2.1.2.3 3.5.4.10]
108840088  adenine phosphoribosyltransferase 5 isoform X1 [KO:K00759] [EC:2.4.2.7]
108847053  adenine phosphoribosyltransferase 2 isoform X1 [KO:K00759] [EC:2.4.2.7]
108814969  adenine phosphoribosyltransferase 2 [KO:K00759] [EC:2.4.2.7]
108851447  adenine phosphoribosyltransferase 3 [KO:K00759] [EC:2.4.2.7]
108822039  adenine phosphoribosyltransferase 1 isoform X1 [KO:K00759] [EC:2.4.2.7]
108818446  adenine phosphoribosyltransferase 5 [KO:K00759] [EC:2.4.2.7]
108820007  adenine phosphoribosyltransferase 1 [KO:K00759] [EC:2.4.2.7]
130507447  adenine phosphoribosyltransferase 3 [KO:K00759] [EC:2.4.2.7]
108824561  uncharacterized protein LOC108824561 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108823965  uncharacterized protein LOC108823965 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108817432  uncharacterized protein LOC108817432 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108843101  uncharacterized protein LOC108843101 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108822888  uncharacterized protein LOC108822888 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
130498877  uncharacterized protein LOC130498877 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108839386  uncharacterized protein LOC108839386 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
108824429  uncharacterized protein LOC108824429 [KO:K00760] [EC:2.4.2.8]
130499941  uncharacterized protein LOC130499941 [KO:K00760] [EC:2.4.2.8]
108805984  inosine-5'-monophosphate dehydrogenase 2 [KO:K00088] [EC:1.1.1.205]
108823573  inosine-5'-monophosphate dehydrogenase 1 [KO:K00088] [EC:1.1.1.205]
108857195  nucleoside diphosphate kinase II, chloroplastic [KO:K00940] [EC:2.7.4.6]
108829845  nucleoside diphosphate kinase III, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
108841820  nucleoside diphosphate kinase IV, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
108822237  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
108826299  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
130494961  uncharacterized protein LOC130494961 [KO:K00940] [EC:2.7.4.6]
108831535  LOW QUALITY PROTEIN: nucleoside diphosphate kinase III, chloroplastic/mitochondrial [KO:K00940] [EC:2.7.4.6]
108809982  probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
108852144  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
108843009  probable apyrase 4 isoform X1 [KO:K01510] [EC:3.6.1.5]
108843219  probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
108812996  apyrase 1 [KO:K14641] [EC:3.6.1.5]
108814863  apyrase 2 [KO:K14641] [EC:3.6.1.5]
108843931  apyrase 2 [KO:K14641] [EC:3.6.1.5]
108856226  apyrase 1 [KO:K14641] [EC:3.6.1.5]
130496893  apyrase 1-like [KO:K14641] [EC:3.6.1.5]
130509371  apyrase 2 [KO:K14641] [EC:3.6.1.5]
108851509  inosine triphosphate pyrophosphatase [KO:K01519] [EC:3.6.1.66]
108820098  inosine triphosphate pyrophosphatase-like [KO:K01519] [EC:3.6.1.66]
108842495  xanthine dehydrogenase 1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
108827122  xanthine dehydrogenase 1-like [KO:K00106] [EC:1.17.1.4 1.17.3.2]
108851682  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
108818636  nudix hydrolase 25-like [KO:K26955] [EC:3.6.1.17]
108828937  nudix hydrolase 25-like [KO:K26955] [EC:3.6.1.17]
108859629  nudix hydrolase 25 [KO:K26955] [EC:3.6.1.17]
108828529  LOW QUALITY PROTEIN: uncharacterized protein LOC108828529 [KO:K01951] [EC:6.3.5.2]
108830879  guanylate kinase 2 isoform X1 [KO:K00942] [EC:2.7.4.8]
108856512  guanylate kinase 2 [KO:K00942] [EC:2.7.4.8]
108833495  guanylate kinase 3, chloroplastic [KO:K00942] [EC:2.7.4.8]
108814608  guanylate kinase 2 [KO:K00942] [EC:2.7.4.8]
130494580  guanylate kinase 2-like isoform X1 [KO:K00942] [EC:2.7.4.8]
108822723  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
108805986  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
130506840  ribonucleoside-diphosphate reductase large subunit-like [KO:K10807] [EC:1.17.4.1]
108807953  ribonucleoside-diphosphate reductase small chain C-like [KO:K10808] [EC:1.17.4.1]
108834910  ribonucleoside-diphosphate reductase small chain C [KO:K10808] [EC:1.17.4.1]
108857495  ribonucleoside-diphosphate reductase small chain A [KO:K10808] [EC:1.17.4.1]
108819422  uncharacterized protein LOC108819422 [KO:K07023] [EC:3.1.3.89]
108852023  uncharacterized protein LOC108852023 [KO:K07023] [EC:3.1.3.89]
108809058  uncharacterized protein LOC108809058 [KO:K07023] [EC:3.1.3.89]
130498564  uncharacterized protein LOC130498564 isoform X1 [KO:K07023] [EC:3.1.3.89]
108828360  putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [KO:K00951] [EC:2.7.6.5]
108857634  probable GTP diphosphokinase CRSH, chloroplastic [KO:K00951] [EC:2.7.6.5]
108843457  putative GTP diphosphokinase RSH1, chloroplastic [KO:K00951] [EC:2.7.6.5]
108857284  probable GTP diphosphokinase CRSH, chloroplastic [KO:K00951] [EC:2.7.6.5]
108862601  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
108863143  probable GTP diphosphokinase RSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
108855132  phytosulfokine receptor 1 [KO:K27625] [EC:2.7.11.1 4.6.1.2]
108806822  phytosulfokine receptor 1-like [KO:K27625] [EC:2.7.11.1 4.6.1.2]
108830881  adenylosuccinate synthetase, chloroplastic [KO:K01939] [EC:6.3.4.4]
108833210  adenylosuccinate synthetase, chloroplastic-like [KO:K01939] [EC:6.3.4.4]
108814968  adenylosuccinate synthetase, chloroplastic [KO:K01939] [EC:6.3.4.4]
108856504  adenylosuccinate synthetase, chloroplastic [KO:K01939] [EC:6.3.4.4]
108813328  AMP deaminase [KO:K01490] [EC:3.5.4.6]
108855740  AMP deaminase [KO:K01490] [EC:3.5.4.6]
108847771  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
108818468  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
108861350  adenosine kinase 1 [KO:K00856] [EC:2.7.1.20]
108848675  adenylate kinase 1, chloroplastic-like [KO:K00939] [EC:2.7.4.3]
108836644  adenylate kinase 5, chloroplastic [KO:K00939] [EC:2.7.4.3]
108847747  adenylate kinase 3 [KO:K00939] [EC:2.7.4.3]
108862011  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
108823941  adenylate kinase 2, chloroplastic [KO:K00939] [EC:2.7.4.3]
108856969  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
108854334  adenylate kinase 2, chloroplastic [KO:K00939] [EC:2.7.4.3]
108847033  adenylate kinase 1, chloroplastic [KO:K00939] [EC:2.7.4.3]
108824009  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
108812414  probable adenylate kinase 6, chloroplastic [KO:K00939] [EC:2.7.4.3]
108845875  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
108814840  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
130508429  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
108843722  uncharacterized protein LOC108843722 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
108829966  uncharacterized protein LOC108829966 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
108823743  bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT isoform X1 [KO:K01522] [EC:3.6.1.29]
108820955  ATP sulfurylase 2 [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108814520  ATP sulfurylase 2 [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108843026  ATP-sulfurylase 3, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108835579  ATP sulfurylase 1, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108862542  ATP sulfurylase 1, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108854410  ATP sulfurylase 4, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108830873  ATP sulfurylase 1, chloroplastic-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
108859305  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
108859543  adenylyl-sulfate kinase 4, chloroplastic [KO:K00860] [EC:2.7.1.25]
108830734  adenylyl-sulfate kinase 2, chloroplastic-like [KO:K00860] [EC:2.7.1.25]
108855675  adenylyl-sulfate kinase 2, chloroplastic [KO:K00860] [EC:2.7.1.25]
108821521  adenylyl-sulfate kinase 2, chloroplastic-like [KO:K00860] [EC:2.7.1.25]
108828428  adenylyl-sulfate kinase 2, chloroplastic [KO:K00860] [EC:2.7.1.25]
108856684  adenylyl-sulfate kinase 1, chloroplastic [KO:K00860] [EC:2.7.1.25]
130511891  adenylyl-sulfate kinase 2, chloroplastic [KO:K00860] [EC:2.7.1.25]
108861971  uricase [KO:K00365] [EC:1.7.3.3]
108843203  uric acid degradation bifunctional protein TTL isoform X1 [KO:K13484] [EC:3.5.2.17 4.1.1.97]
108823417  allantoinase [KO:K01466] [EC:3.5.2.5]
108855867  allantoate deiminase isoform X1 [KO:K02083] [EC:3.5.3.9]
108852929  (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
108848496  ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
108843332  urease [KO:K01427] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
rsz00030  Pentose phosphate pathway
rsz00220  Arginine biosynthesis
rsz00250  Alanine, aspartate and glutamate metabolism
rsz00260  Glycine, serine and threonine metabolism
rsz00340  Histidine metabolism
rsz00630  Glyoxylate and dicarboxylate metabolism
rsz00730  Thiamine metabolism
rsz00740  Riboflavin metabolism
rsz00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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