KEGG   PATHWAY: sund04146
Entry
sund04146                   Pathway                                
Name
Peroxisome - Sceloporus undulatus (fence lizard)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
sund04146  Peroxisome
sund04146

Other DBs
GO: 0005777
Organism
Sceloporus undulatus (fence lizard) [GN:sund]
Gene
121919813  PEX16; peroxisomal biogenesis factor 16 [KO:K13335]
121936326  PEX3; peroxisomal biogenesis factor 3 [KO:K13336]
121915844  PEX19; peroxisomal biogenesis factor 19 [KO:K13337]
121928255  ABCD3; ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
121933230  PEX1; peroxisome biogenesis factor 1 isoform X1 [KO:K13338]
121919445  PEX6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
121932026  PEX26; peroxisome assembly protein 26 isoform X1 [KO:K13340]
121919366  PEX7; peroxisomal biogenesis factor 7 isoform X1 [KO:K13341]
121927299  PEX5L; PEX5-related protein [KO:K13342]
121923105  PEX5; peroxisomal biogenesis factor 5 isoform X1 [KO:K13342]
121936736  PEX14; peroxisomal membrane protein PEX14 [KO:K13343]
121918425  PEX13; peroxisome biogenesis factor 13 [KO:K13344]
121917033  PEX12; peroxisome assembly protein 12 [KO:K13345]
121936027  PEX10; peroxisome biogenesis factor 10 [KO:K13346]
121928667  PEX2; peroxisome biogenesis factor 2 [KO:K06664]
121916759  PXMP2; peroxisomal membrane protein 2 [KO:K13347]
121918487  MPV17L2; mpv17-like protein 2 [KO:K13348]
121919620  MPV17; protein Mpv17 [KO:K13348]
121937535  MPV17L; mpv17-like protein [KO:K13349]
121928744  PXMP4; peroxisomal membrane protein 4 isoform X1 [KO:K13350]
121935122  PEX11A; peroxisomal membrane protein 11A [KO:K13351]
121915307  PEX11B; peroxisomal membrane protein 11B isoform X1 [KO:K13352]
121917875  peroxisomal membrane protein 11C-like [KO:K13353]
121931468  SLC25A17; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
121934086  HACL1; 2-hydroxyacyl-CoA lyase 1 isoform X1 [KO:K12261] [EC:4.1.2.63]
121920692  alpha-methylacyl-CoA racemase-like [KO:K01796] [EC:5.1.99.4]
121920693  alpha-methylacyl-CoA racemase-like [KO:K01796] [EC:5.1.99.4]
121931681  PHYH; phytanoyl-CoA dioxygenase, peroxisomal [KO:K00477] [EC:1.14.11.18]
121921210  ACOX1; peroxisomal acyl-coenzyme A oxidase 1 [KO:K00232] [EC:1.3.3.6]
121931028  ACOX3; peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
121924949  LOW QUALITY PROTEIN: peroxisomal acyl-coenzyme A oxidase 2-like [KO:K10214] [EC:1.17.99.3]
121920729  peroxisomal acyl-coenzyme A oxidase 2-like [KO:K10214] [EC:1.17.99.3]
121920730  peroxisomal acyl-coenzyme A oxidase 2-like [KO:K10214] [EC:1.17.99.3]
121921111  HSD17B4; peroxisomal multifunctional enzyme type 2 isoform X1 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
121927882  SCP2; sterol carrier protein 2 isoform X1 [KO:K08764] [EC:2.3.1.176]
121930998  acyl-coenzyme A amino acid N-acyltransferase 1-like isoform X1 [KO:K00659] [EC:2.3.1.65 3.1.2.2]
121927038  EHHADH; peroxisomal bifunctional enzyme [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
121933061  ACAA1; 3-ketoacyl-CoA thiolase, peroxisomal [KO:K07513] [EC:2.3.1.16]
121914808  DECR2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] isoform X1 [KO:K13237] [EC:1.3.1.124]
121915167  ECH1; delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial isoform X1 [KO:K12663] [EC:5.3.3.21]
121921793  ABCD1; LOW QUALITY PROTEIN: ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
121932062  ABCD2; ATP-binding cassette sub-family D member 2 [KO:K05676] [EC:7.6.2.4]
121935732  ABCD4; lysosomal cobalamin transporter ABCD4 isoform X1 [KO:K05678] [EC:7.6.2.8]
121934323  very long-chain acyl-CoA synthetase-like isoform X1 [KO:K08746] [EC:6.2.1.- 6.2.1.3]
121934324  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
121934325  very long-chain acyl-CoA synthetase-like [KO:K08746] [EC:6.2.1.- 6.2.1.3]
121924683  ACSL3; long-chain-fatty-acid--CoA ligase 3 [KO:K01897] [EC:6.2.1.3]
121920381  ACSL6; long-chain-fatty-acid--CoA ligase 6 [KO:K01897] [EC:6.2.1.3]
121931393  ACSL1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
121936726  ACSL4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
121926861  ACSL5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
121936964  PECR; peroxisomal trans-2-enoyl-CoA reductase [KO:K07753] [EC:1.3.1.38]
121928147  enoyl-CoA delta isomerase 2-like isoform X1 [KO:K13239] [EC:5.3.3.8]
121928149  enoyl-CoA delta isomerase 2-like [KO:K13239] [EC:5.3.3.8]
121914839  NUDT7; peroxisomal coenzyme A diphosphatase NUDT7 isoform X1 [KO:K17879] [EC:3.6.1.77]
121922305  NUDT12; NAD-capped RNA hydrolase NUDT12 isoform X1 [KO:K03426] [EC:3.6.1.22]
121926202  NUDT13; NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X1 [KO:K03426] [EC:3.6.1.22]
121914678  NUDT19; nucleoside diphosphate-linked moiety X motif 19 [KO:K13355] [EC:3.6.1.77]
121928202  ACOT8; LOW QUALITY PROTEIN: acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
121921279  carnitine O-acetyltransferase-like [KO:K00624] [EC:2.3.1.7]
121936906  CRAT; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
121934122  CROT; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
121914262  MLYCD; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
121921665  GNPAT; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
121924149  AGPS; alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1 [KO:K00803] [EC:2.5.1.26]
121934570  FAR1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
121931470  fatty acyl-CoA reductase 1-like [KO:K13356] [EC:1.2.1.84]
121931604  fatty acyl-CoA reductase 1-like isoform X1 [KO:K13356] [EC:1.2.1.84]
121918725  MVK; mevalonate kinase [KO:K00869] [EC:2.7.1.36]
121916084  PMVK; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
121925014  AGXT; serine--pyruvate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
121916653  DAO; D-amino-acid oxidase [KO:K00273] [EC:1.4.3.3]
121927441  DDO; D-aspartate oxidase [KO:K00272] [EC:1.4.3.1]
121933427  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
121930898  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
121925721  PAOX; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X1 [KO:K00308] [EC:1.5.3.13]
121916875  PIPOX; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
121919655  hydroxymethylglutaryl-CoA lyase, mitochondrial-like [KO:K01640] [EC:4.1.3.4]
121915177  HMGCL; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
121923725  HAO2; hydroxyacid oxidase 2 isoform X1 [KO:K11517] [EC:1.1.3.15]
121920978  HAO1; hydroxyacid oxidase 1 isoform X1 [KO:K11517] [EC:1.1.3.15]
121923489  CAT; catalase isoform X1 [KO:K03781] [EC:1.11.1.6]
121916210  PRDX5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
121924744  SOD1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
121918029  SOD2; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
121917020  LOW QUALITY PROTEIN: nitric oxide synthase, inducible-like [KO:K13241] [EC:1.14.13.39]
121929635  PRDX1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
121921147  EPHX2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
121921706  GSTK1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
121924204  XDH; LOW QUALITY PROTEIN: xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
121935471  dehydrogenase/reductase SDR family member 4-like [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
sund00071  Fatty acid degradation
sund00120  Primary bile acid biosynthesis
sund00230  Purine metabolism
sund00564  Glycerophospholipid metabolism
sund00565  Ether lipid metabolism
sund00830  Retinol metabolism
sund00900  Terpenoid backbone biosynthesis
sund03320  PPAR signaling pathway
KO pathway
ko04146   
LinkDB

DBGET integrated database retrieval system