KEGG   PATHWAY: tdw00270
Entry
tdw00270                    Pathway                                
Name
Cysteine and methionine metabolism - Triplophysa dalaica
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
tdw00270  Cysteine and methionine metabolism
tdw00270

Module
tdw_M00034  Methionine salvage pathway [PATH:tdw00270]
tdw_M00035  Methionine degradation [PATH:tdw00270]
tdw_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:tdw00270]
Other DBs
GO: 0006534 0006555
Organism
Triplophysa dalaica [GN:tdw]
Gene
130425086  cystathionine gamma-lyase-like [KO:K01758] [EC:4.4.1.1]
130424480  kynurenine--oxoglutarate transaminase 3 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
130419078  kyat1; kynurenine--oxoglutarate transaminase 1 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
130427251  cbsb; cystathionine beta-synthase b isoform X1 [KO:K01697] [EC:4.2.1.22]
130407734  bhmt; betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
130425228  zgc:172121; homocysteine S-methyltransferase YbgG isoform X1 [KO:K00547] [EC:2.1.1.10]
130439286  mtr; methionine synthase [KO:K00548] [EC:2.1.1.13]
130411775  mat2al; methionine adenosyltransferase II, alpha-like isoform X1 [KO:K00789] [EC:2.5.1.6]
130412048  mat2aa; methionine adenosyltransferase II, alpha a isoform X1 [KO:K00789] [EC:2.5.1.6]
130431701  mat1a; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
130407821  mat2b; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
130434277  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
130409376  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
130407682  sms; spermine synthase [KO:K00802] [EC:2.5.1.22]
130434282  mtap; S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
130427557  lacc1; purine nucleoside phosphorylase LACC1 isoform X1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
130409920  mri1; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
130419824  apip; methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
130411779  enoph1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
130436574  adi1; acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
130435246  tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
130428904  il4i1; L-amino-acid oxidase [KO:K03334] [EC:1.4.3.2]
130437074  gnmt; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
130426599  dnmt1; DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
130437075  dnmt3ab; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
130434042  dnmt3aa; DNA (cytosine-5-)-methyltransferase 3 alpha a isoform X1 [KO:K17398] [EC:2.1.1.37]
130408786  dnmt3bb.1; DNA (cytosine-5)-methyltransferase 3B isoform X1 [KO:K17399] [EC:2.1.1.37]
130440242  dnmt3ba; DNA (cytosine-5-)-methyltransferase 3 beta, duplicate a isoform X1 [KO:K17399] [EC:2.1.1.37]
130421486  ahcyl2b; adenosylhomocysteinase like 2b [KO:K01251] [EC:3.13.2.1]
130424388  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
130414496  ahcyl2a; adenosylhomocysteinase like 2a isoform X1 [KO:K01251] [EC:3.13.2.1]
130440275  ahcyl1; S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
130421063  bcat1; branched-chain-amino-acid aminotransferase, cytosolic isoform X1 [KO:K00826] [EC:2.6.1.42]
130421245  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
130426299  bcat2; branched-chain-amino-acid aminotransferase, mitochondrial [KO:K00826] [EC:2.6.1.42]
130407894  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
130432125  gclc; glutamate--cysteine ligase catalytic subunit isoform X1 [KO:K11204] [EC:6.3.2.2]
130407313  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
130409441  glutathione synthetase-like [KO:K21456] [EC:6.3.2.3]
130409815  gss; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
130407319  cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
130432224  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
130435991  got2a; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
130420737  got2b; glutamic-oxaloacetic transaminase 2b, mitochondrial [KO:K14455] [EC:2.6.1.1]
130426275  mpst; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
130421044  ldhba; L-lactate dehydrogenase B-A chain [KO:K00016] [EC:1.1.1.27]
130413895  ldha; L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
130414502  ldhbb; L-lactate dehydrogenase B-B chain [KO:K00016] [EC:1.1.1.27]
130436934  mdh1ab; LOW QUALITY PROTEIN: malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
130413804  mdh1aa; malate dehydrogenase 1Aa, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
130411787  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
130436444  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
130436692  serine dehydratase-like isoform X1 [KO:K17989] [EC:4.3.1.17 4.3.1.19]
130427452  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
130419880  psat1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
tdw00010  Glycolysis / Gluconeogenesis
tdw00250  Alanine, aspartate and glutamate metabolism
tdw00260  Glycine, serine and threonine metabolism
tdw00290  Valine, leucine and isoleucine biosynthesis
tdw00430  Taurine and hypotaurine metabolism
tdw00480  Glutathione metabolism
tdw00620  Pyruvate metabolism
tdw00640  Propanoate metabolism
tdw00770  Pantothenate and CoA biosynthesis
tdw00900  Terpenoid backbone biosynthesis
tdw00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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