KEGG   PATHWAY: tod00270
Entry
tod00270                    Pathway                                
Name
Cysteine and methionine metabolism - Talpa occidentalis (Iberian mole)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
tod00270  Cysteine and methionine metabolism
tod00270

Module
tod_M00034  Methionine salvage pathway [PATH:tod00270]
tod_M00035  Methionine degradation [PATH:tod00270]
tod_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:tod00270]
Other DBs
GO: 0006534 0006555
Organism
Talpa occidentalis (Iberian mole) [GN:tod]
Gene
119237015  CTH; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
119232904  kynurenine--oxoglutarate transaminase 1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
119235416  KYAT3; kynurenine--oxoglutarate transaminase 3 isoform X2 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
119257168  CBS; cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
119260224  BHMT; betaine--homocysteine S-methyltransferase 1 isoform X1 [KO:K00544] [EC:2.1.1.5]
119260225  BHMT2; S-methylmethionine--homocysteine S-methyltransferase BHMT2 [KO:K00547] [EC:2.1.1.10]
119244120  methionine synthase-like [KO:K00548] [EC:2.1.1.13]
119244573  methionine synthase [KO:K00548] [EC:2.1.1.13]
119233532  MAT1A; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
119235655  MAT2B; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
119259130  MAT2A; S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
119252781  AMD1; S-adenosylmethionine decarboxylase proenzyme isoform X1 [KO:K01611] [EC:4.1.1.50]
119238597  LOW QUALITY PROTEIN: S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
119235214  SRM; spermidine synthase [KO:K00797] [EC:2.5.1.16]
119246280  SMS; spermine synthase [KO:K00802] [EC:2.5.1.22]
119243723  spermine synthase-like [KO:K00802] [EC:2.5.1.22]
119230524  MTAP; S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
119258737  LACC1; purine nucleoside phosphorylase LACC1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
119241020  MRI1; methylthioribose-1-phosphate isomerase isoform X1 [KO:K08963] [EC:5.3.1.23]
119255367  APIP; methylthioribulose-1-phosphate dehydratase isoform X1 [KO:K08964] [EC:4.2.1.109]
119260541  ENOPH1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
119259592  ADI1; acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
119249037  TAT; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
119249626  IL4I1; LOW QUALITY PROTEIN: L-amino-acid oxidase [KO:K03334] [EC:1.4.3.2]
119236741  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
119252477  GNMT; glycine N-methyltransferase [KO:K00552] [EC:2.1.1.20]
119240935  DNMT1; DNA (cytosine-5)-methyltransferase 1 isoform X2 [KO:K00558] [EC:2.1.1.37]
119259495  DNMT3A; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
119234159  DNMT3B; DNA (cytosine-5)-methyltransferase 3B isoform X3 [KO:K17399] [EC:2.1.1.37]
119235045  adenosylhomocysteinase-like [KO:K01251] [EC:3.13.2.1]
119233926  AHCY; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
119236616  AHCYL1; S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
119246687  AHCYL2; adenosylhomocysteinase 3 isoform X3 [KO:K01251] [EC:3.13.2.1]
119247632  BCAT1; branched-chain-amino-acid aminotransferase, cytosolic isoform X1 [KO:K00826] [EC:2.6.1.42]
119249535  BCAT2; branched-chain-amino-acid aminotransferase, mitochondrial isoform X1 [KO:K00826] [EC:2.6.1.42]
119261123  AGXT2; alanine--glyoxylate aminotransferase 2, mitochondrial isoform X1 [KO:K00827] [EC:2.6.1.44 2.6.1.40]
119252569  GCLC; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
119235125  GCLM; glutamate--cysteine ligase regulatory subunit [KO:K11205]
119233830  GSS; glutathione synthetase [KO:K21456] [EC:6.3.2.3]
119243574  CDO1; cysteine dioxygenase type 1 isoform X1 [KO:K00456] [EC:1.13.11.20]
119235072  LOW QUALITY PROTEIN: putative aspartate aminotransferase, cytoplasmic 2 [KO:K14454] [EC:2.6.1.1]
119233613  GOT1; aspartate aminotransferase, cytoplasmic isoform X1 [KO:K14454] [EC:2.6.1.1]
119257808  GOT1L1; putative aspartate aminotransferase, cytoplasmic 2 isoform X1 [KO:K14454] [EC:2.6.1.1]
119249242  GOT2; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
119247296  MPST; 3-mercaptopyruvate sulfurtransferase isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
119248242  TST; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
119250663  L-lactate dehydrogenase C chain-like [KO:K00016] [EC:1.1.1.27]
119253157  L-lactate dehydrogenase A-like 6A [KO:K00016] [EC:1.1.1.27]
119254951  LOW QUALITY PROTEIN: L-lactate dehydrogenase A-like 6B [KO:K00016] [EC:1.1.1.27]
119255516  LDHA; L-lactate dehydrogenase A chain isoform X1 [KO:K00016] [EC:1.1.1.27]
119255518  L-lactate dehydrogenase C chain [KO:K00016] [EC:1.1.1.27]
119247645  LDHB; LOW QUALITY PROTEIN: L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
119258991  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119241535  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
119245321  SDSL; serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
119245322  SDS; L-serine dehydratase/L-threonine deaminase [KO:K17989] [EC:4.3.1.17 4.3.1.19]
119235553  PHGDH; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
119231864  PSAT1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
119233288  phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
tod00010  Glycolysis / Gluconeogenesis
tod00250  Alanine, aspartate and glutamate metabolism
tod00260  Glycine, serine and threonine metabolism
tod00290  Valine, leucine and isoleucine biosynthesis
tod00430  Taurine and hypotaurine metabolism
tod00480  Glutathione metabolism
tod00620  Pyruvate metabolism
tod00640  Propanoate metabolism
tod00770  Pantothenate and CoA biosynthesis
tod00900  Terpenoid backbone biosynthesis
tod00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

DBGET integrated database retrieval system