KEGG   PATHWAY: twl00510
Entry
twl00510                    Pathway                                
Name
N-Glycan biosynthesis - Tripterygium wilfordii (thunder duke vine)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
twl00510  N-Glycan biosynthesis
twl00510

Module
twl_M00055  N-glycan precursor biosynthesis [PATH:twl00510]
twl_M00073  N-glycan precursor trimming [PATH:twl00510]
Other DBs
GO: 0006487
Organism
Tripterygium wilfordii (thunder duke vine) [GN:twl]
Gene
119989253  polyprenol reductase 2-like isoform X1 [KO:K12345] [EC:1.3.1.22 1.3.1.94]
120002420  dolichol kinase EVAN isoform X1 [KO:K00902] [EC:2.7.1.108]
120004937  dolichol kinase EVAN-like isoform X1 [KO:K00902] [EC:2.7.1.108]
119987922  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like [KO:K01001] [EC:2.7.8.15]
120013375  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like [KO:K01001] [EC:2.7.8.15]
119998364  UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase-like [KO:K01001] [EC:2.7.8.15]
119980419  dolichyl-phosphate beta-glucosyltransferase [KO:K00729] [EC:2.4.1.117]
120013734  UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X1 [KO:K07432] [EC:2.4.1.141]
120014233  UDP-N-acetylglucosamine transferase subunit ALG13 homolog [KO:K07432] [EC:2.4.1.141]
119990484  UDP-N-acetylglucosamine transferase subunit ALG14-like [KO:K07441] [EC:2.4.1.141]
120015225  UDP-N-acetylglucosamine transferase subunit ALG14-like [KO:K07441] [EC:2.4.1.141]
120000177  dolichol-phosphate mannosyltransferase subunit 1 [KO:K00721] [EC:2.4.1.83]
120009213  dolichol-phosphate mannosyltransferase subunit 1-like [KO:K00721] [EC:2.4.1.83]
119987310  dolichol-phosphate mannose synthase subunit 2-like [KO:K09658]
120015927  dolichol-phosphate mannose synthase subunit 2-like [KO:K09658]
120000227  dolichol-phosphate mannose synthase subunit 3-like [KO:K09659]
119990360  dolichol-phosphate mannose synthase subunit 3-like [KO:K09659]
120007986  dolichol-phosphate mannose synthase subunit 3-like [KO:K09659]
119989996  UDP-glycosyltransferase TURAN-like isoform X1 [KO:K03842] [EC:2.4.1.142]
120005458  alpha-1,3/1,6-mannosyltransferase ALG2-like [KO:K03843] [EC:2.4.1.132 2.4.1.257]
119985079  alpha-1,3/1,6-mannosyltransferase ALG2-like [KO:K03843] [EC:2.4.1.132 2.4.1.257]
120011791  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [KO:K03844] [EC:2.4.1.131]
120014842  GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [KO:K03844] [EC:2.4.1.131]
119983571  dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase [KO:K03845] [EC:2.4.1.258]
119988178  dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [KO:K03846] [EC:2.4.1.259 2.4.1.261]
119985036  dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase-like [KO:K03846] [EC:2.4.1.259 2.4.1.261]
119984708  dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase [KO:K03847] [EC:2.4.1.260]
119995387  probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
119998810  probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
119982497  probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
119988813  dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [KO:K03850] [EC:2.4.1.256]
119980984  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [KO:K07151] [EC:2.4.99.18]
120005667  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like [KO:K07151] [EC:2.4.99.18]
119997787  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like isoform X1 [KO:K07151] [EC:2.4.99.18]
119986408  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like [KO:K07151] [EC:2.4.99.18]
120006167  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [KO:K12666]
120008909  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [KO:K12666]
120010814  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A-like [KO:K12666]
119991126  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X1 [KO:K12667]
120011131  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X1 [KO:K12667]
120016369  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1-like [KO:K12668]
119986691  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
120013064  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [KO:K12670]
120015575  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [KO:K12670]
120005878  dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like isoform X1 [KO:K12670]
119989135  probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [KO:K19478]
119989411  probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [KO:K19478]
119989412  probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [KO:K19478]
120006190  oligosaccharyltransferase complex subunit ostc-like [KO:K26501]
119989846  oligosaccharyltransferase complex subunit ostc-like [KO:K26501]
119997660  transmembrane protein 258 [KO:K26502]
120005727  transmembrane protein 258-like [KO:K26502]
119995092  lipid phosphate phosphatase gamma [KO:K07252] [EC:3.6.1.43]
120000167  mannosyl-oligosaccharide glucosidase GCS1 [KO:K01228] [EC:3.2.1.106]
120006906  mannosyl-oligosaccharide glucosidase GCS1-like [KO:K01228] [EC:3.2.1.106]
120002992  probable glucan 1,3-alpha-glucosidase [KO:K05546] [EC:3.2.1.207]
120007542  probable glucan 1,3-alpha-glucosidase [KO:K05546] [EC:3.2.1.207]
120015206  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 [KO:K23741] [EC:3.2.1.209]
120007687  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [KO:K01230] [EC:3.2.1.113]
120010621  mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1-like [KO:K01230] [EC:3.2.1.113]
119991048  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [KO:K00726] [EC:2.4.1.101]
120008882  alpha-mannosidase 2 [KO:K01231] [EC:3.2.1.114]
119992087  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [KO:K00736] [EC:2.4.1.143]
120007639  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [KO:K00736] [EC:2.4.1.143]
119999512  uncharacterized protein LOC119999512 [KO:K00737] [EC:2.4.1.144]
120000146  uncharacterized protein LOC120000146 [KO:K00737] [EC:2.4.1.144]
119990629  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like [KO:K00737] [EC:2.4.1.144]
119996258  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [KO:K00737] [EC:2.4.1.144]
120007957  uncharacterized protein LOC120007957 [KO:K00737] [EC:2.4.1.144]
120009514  uncharacterized protein LOC120009514 isoform X1 [KO:K00737] [EC:2.4.1.144]
120010610  uncharacterized protein LOC120010610 isoform X1 [KO:K00737] [EC:2.4.1.144]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003   
G00004   
G00005   
G00006   
G00007   
G00008   
G00009   
G00010   
G00011   
G00012   
G00013   
G00014   
G00015   
G00016  Core fucose
G00017   
G00018  DS 3
G00019   
G00020   
G00021   
G00022   
G00171   
G10526   
G10595   
G10596   
G10597   
G10598   
G10599   
G10694   
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
twl00051  Fructose and mannose metabolism
twl00511  Other glycan degradation
twl00513  Various types of N-glycan biosynthesis
twl00520  Amino sugar and nucleotide sugar metabolism
twl00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
twl00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   
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