KEGG   PATHWAY: vgi00270
Entry
vgi00270                    Pathway                                
Name
Cysteine and methionine metabolism - Vibrio gigantis
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
vgi00270  Cysteine and methionine metabolism
vgi00270

Module
vgi_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:vgi00270]
vgi_M00021  Cysteine biosynthesis, serine => cysteine [PATH:vgi00270]
Other DBs
GO: 0006534 0006555
Organism
Vibrio gigantis [GN:vgi]
Gene
MID13_00900  hypothetical protein [KO:K00640] [EC:2.3.1.30]
MID13_00990  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
MID13_17620  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
MID13_04565  PLP-dependent cysteine synthase family protein [KO:K01738] [EC:2.5.1.47]
MID13_11515  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
MID13_05600  cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
MID13_22325  pyridoxal phosphate-dependent aminotransferase [KO:K14155] [EC:4.4.1.13]
MID13_23420  PatB family C-S lyase [KO:K14155] [EC:4.4.1.13]
MID13_01670  metH; methionine synthase [KO:K00548] [EC:2.1.1.13]
MID13_08940  methionine synthase [KO:K00549] [EC:2.1.1.14]
MID13_09875  metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]
MID13_13260  metK; methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]
MID13_17085  acyl-homoserine-lactone synthase [KO:K13062] [EC:2.3.1.184]
MID13_02420  mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]
MID13_02795  pgeF; peptidoglycan editing factor PgeF [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
MID13_01380  amidohydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
MID13_22830  amidohydrolase [KO:K12960] [EC:3.5.4.31 3.5.4.28]
MID13_06150  aspartate/tyrosine/aromatic aminotransferase [KO:K00832] [EC:2.6.1.57]
MID13_08445  GAF domain-containing protein [KO:K08968] [EC:1.8.4.14]
MID13_12900  luxS; S-ribosylhomocysteine lyase [KO:K07173] [EC:4.4.1.21]
MID13_13000  aspartate kinase [KO:K00928] [EC:2.7.2.4]
MID13_01675  lysC; lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
MID13_02485  thrA; bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
MID13_14340  bifunctional aspartate kinase/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
MID13_10820  asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
MID13_11060  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
MID13_06965  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
MID13_14345  O-succinylhomoserine (thiol)-lyase [KO:K01739] [EC:2.5.1.48]
MID13_02060  O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase [KO:K01740] [EC:2.5.1.49]
MID13_06505  PLP-dependent transferase [KO:K01740] [EC:2.5.1.49]
MID13_15500  branched-chain amino acid transaminase [KO:K00826] [EC:2.6.1.42]
MID13_12910  gshA; glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
MID13_16105  gshA; glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
MID13_13290  gshB; glutathione synthase [KO:K01920] [EC:6.3.2.3]
MID13_16120  glutathione synthase [KO:K01920] [EC:6.3.2.3]
MID13_19625  aspartate/tyrosine/aromatic aminotransferase [KO:K00813] [EC:2.6.1.1]
MID13_20785  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
MID13_20680  bifunctional aspartate transaminase/aspartate 4-decarboxylase [KO:K09758] [EC:4.1.1.12]
MID13_16395  aspartate/glutamate racemase family protein [KO:K25316] [EC:5.1.1.10]
MID13_01880  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MID13_21100  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
MID13_04770  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
MID13_06210  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
MID13_13210  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
MID13_07435  D-2-hydroxyacid dehydrogenase family protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
MID13_06110  serC; 3-phosphoserine/phosphohydroxythreonine transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
vgi00010  Glycolysis / Gluconeogenesis
vgi00250  Alanine, aspartate and glutamate metabolism
vgi00260  Glycine, serine and threonine metabolism
vgi00290  Valine, leucine and isoleucine biosynthesis
vgi00430  Taurine and hypotaurine metabolism
vgi00480  Glutathione metabolism
vgi00620  Pyruvate metabolism
vgi00640  Propanoate metabolism
vgi00770  Pantothenate and CoA biosynthesis
vgi00900  Terpenoid backbone biosynthesis
vgi00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

DBGET integrated database retrieval system