KEGG   PATHWAY: xhe00270
Entry
xhe00270                    Pathway                                
Name
Cysteine and methionine metabolism - Xiphophorus hellerii (green swordtail)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
xhe00270  Cysteine and methionine metabolism
xhe00270

Module
xhe_M00034  Methionine salvage pathway [PATH:xhe00270]
xhe_M00035  Methionine degradation [PATH:xhe00270]
xhe_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:xhe00270]
Other DBs
GO: 0006534 0006555
Organism
Xiphophorus hellerii (green swordtail) [GN:xhe]
Gene
116725975  cth; cystathionine gamma-lyase [KO:K01758] [EC:4.4.1.1]
116726503  kyat3; kynurenine--oxoglutarate transaminase 3 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
116724408  kyat1; kynurenine--oxoglutarate transaminase 1 isoform X1 [KO:K00816] [EC:2.6.1.7 4.4.1.13 2.6.1.64]
116716047  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
116722914  cystathionine beta-synthase-like [KO:K01697] [EC:4.2.1.22]
116730429  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
116730431  betaine--homocysteine S-methyltransferase 1 [KO:K00544] [EC:2.1.1.5]
116724267  betaine--homocysteine S-methyltransferase 1-like [KO:K00544] [EC:2.1.1.5]
116726015  homocysteine S-methyltransferase-like isoform X1 [KO:K00547] [EC:2.1.1.10]
116727287  mtr; methionine synthase [KO:K00548] [EC:2.1.1.13]
116713317  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
116727842  mat2b; methionine adenosyltransferase 2 subunit beta isoform X1 [KO:K00789] [EC:2.5.1.6]
116730342  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
116724124  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
116724956  S-adenosylmethionine synthase-like [KO:K00789] [EC:2.5.1.6]
116734431  amd1; S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
116725856  srm; spermidine synthase [KO:K00797] [EC:2.5.1.16]
116728402  spermine synthase-like [KO:K00802] [EC:2.5.1.22]
116716541  spermine synthase-like [KO:K00802] [EC:2.5.1.22]
116720436  mtap; S-methyl-5'-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
116723111  lacc1; laccase domain-containing protein 1 [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
116719483  mri1; methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
116718304  apip; methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
116724127  enoph1; enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
116708800  adi1; 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]
116730356  tat; tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
116732114  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
116732163  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
116732189  L-amino-acid oxidase-like [KO:K03334] [EC:1.4.3.2]
116708192  L-amino-acid oxidase-like isoform X1 [KO:K03334] [EC:1.4.3.2]
116726160  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
116708699  glycine N-methyltransferase-like [KO:K00552] [EC:2.1.1.20]
116735373  dnmt1; DNA (cytosine-5)-methyltransferase 1 isoform X1 [KO:K00558] [EC:2.1.1.37]
116733992  DNA (cytosine-5)-methyltransferase 3A-like isoform X1 [KO:K17398] [EC:2.1.1.37]
116709450  dnmt3a; DNA (cytosine-5)-methyltransferase 3A isoform X1 [KO:K17398] [EC:2.1.1.37]
116720621  uncharacterized protein LOC116720621 [KO:K17399] [EC:2.1.1.37]
116711193  uncharacterized protein LOC116711193 [KO:K17399] [EC:2.1.1.37]
116718546  DNA (cytosine-5)-methyltransferase 3B-like isoform X1 [KO:K17399] [EC:2.1.1.37]
116726342  ahcyl1; S-adenosylhomocysteine hydrolase-like protein 1 isoform X1 [KO:K01251] [EC:3.13.2.1]
116736553  putative adenosylhomocysteinase 3 isoform X1 [KO:K01251] [EC:3.13.2.1]
116729474  S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
116709699  S-adenosylhomocysteine hydrolase-like protein 1 [KO:K01251] [EC:3.13.2.1]
116710110  ahcy; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
116735956  branched-chain-amino-acid aminotransferase, cytosolic-like isoform X1 [KO:K00826] [EC:2.6.1.42]
116736735  branched-chain-amino-acid aminotransferase, cytosolic-like [KO:K00826] [EC:2.6.1.42]
116724194  agxt2; alanine--glyoxylate aminotransferase 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
116713016  gclc; glutamate--cysteine ligase catalytic subunit [KO:K11204] [EC:6.3.2.2]
116726206  gclm; glutamate--cysteine ligase regulatory subunit [KO:K11205]
116720447  gss; glutathione synthetase isoform X1 [KO:K21456] [EC:6.3.2.3]
116730443  cdo1; cysteine dioxygenase type 1 [KO:K00456] [EC:1.13.11.20]
116720250  aspartate aminotransferase, cytoplasmic-like [KO:K14454] [EC:2.6.1.1]
116713456  got1; aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
116718618  got2; aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
116720675  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
116735871  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
116735872  3-mercaptopyruvate sulfurtransferase-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
116734048  L-lactate dehydrogenase A chain [KO:K00016] [EC:1.1.1.27]
116735960  ldhb; L-lactate dehydrogenase B chain isoform X1 [KO:K00016] [EC:1.1.1.27]
116736773  L-lactate dehydrogenase B chain [KO:K00016] [EC:1.1.1.27]
116719759  mdh1; malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
116713526  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
116717262  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
116729256  sds; L-serine dehydratase/L-threonine deaminase isoform X1 [KO:K17989] [EC:4.3.1.17 4.3.1.19]
116708700  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
116725335  serine dehydratase-like [KO:K17989] [EC:4.3.1.17 4.3.1.19]
116722894  phgdh; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
116730292  psat1; phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01102  O-Phospho-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
xhe00010  Glycolysis / Gluconeogenesis
xhe00250  Alanine, aspartate and glutamate metabolism
xhe00260  Glycine, serine and threonine metabolism
xhe00290  Valine, leucine and isoleucine biosynthesis
xhe00430  Taurine and hypotaurine metabolism
xhe00480  Glutathione metabolism
xhe00620  Pyruvate metabolism
xhe00640  Propanoate metabolism
xhe00770  Pantothenate and CoA biosynthesis
xhe00900  Terpenoid backbone biosynthesis
xhe00920  Sulfur metabolism
KO pathway
ko00270   
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