KEGG   PATHWAY: sce00270
Entry
sce00270                    Pathway                                
Name
Cysteine and methionine metabolism - Saccharomyces cerevisiae (budding yeast)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
sce00270  Cysteine and methionine metabolism
sce00270

Module
sce_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:sce00270]
sce_M00034  Methionine salvage pathway [PATH:sce00270]
sce_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:sce00270]
Other DBs
GO: 0006534 0006555
Organism
Saccharomyces cerevisiae (budding yeast) [GN:sce]
Gene
YGR012W  MCY1; putative cysteine synthase [KO:K01738] [EC:2.5.1.47]
YLR303W  MET17; bifunctional cysteine synthase/O-acetylhomoserine aminocarboxypropyltransferase MET17 [KO:K17069] [EC:2.5.1.49 2.5.1.47]
YAL012W  CYS3; cystathionine gamma-lyase CYS3 [KO:K01758] [EC:4.4.1.1]
YFR055W  IRC7; cysteine-S-conjugate beta-lyase IRC7 [KO:K01760] [EC:4.4.1.13]
YGL184C  STR3; cystathionine beta-lyase STR3 [KO:K01760] [EC:4.4.1.13]
YGR155W  CYS4; cystathionine beta-synthase CYS4 [KO:K01697] [EC:4.2.1.22]
YPL273W  SAM4; S-adenosylmethionine-homocysteine S-methyltransferase SAM4 [KO:K00547] [EC:2.1.1.10]
YLL062C  MHT1; S-adenosylmethionine-homocysteine S-methyltransferase MHT1 [KO:K00547] [EC:2.1.1.10]
YER091C  MET6; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]
YLR180W  SAM1; methionine adenosyltransferase SAM1 [KO:K00789] [EC:2.5.1.6]
YDR502C  SAM2; methionine adenosyltransferase SAM2 [KO:K00789] [EC:2.5.1.6]
YOL052C  SPE2; adenosylmethionine decarboxylase SPE2 [KO:K01611] [EC:4.1.1.50]
YPR069C  SPE3; spermidine synthase [KO:K00797] [EC:2.5.1.16]
YLR146C  SPE4; spermine synthase [KO:K00802] [EC:2.5.1.22]
YLR017W  MEU1; S-methyl-5-thioadenosine phosphorylase [KO:K00772] [EC:2.4.2.28]
YPR118W  MRI1; S-methyl-5-thioribose-1-phosphate isomerase MRI1 [KO:K08963] [EC:5.3.1.23]
YJR024C  MDE1; methylthioribulose 1-phosphate dehydratase MDE1 [KO:K08964] [EC:4.2.1.109]
YEL038W  UTR4; putative acireductone synthase UTR4 [KO:K09880] [EC:3.1.3.77]
YMR009W  ADI1; acireductone dioxygenase (Ni2+-requiring) [KO:K08967] [EC:1.13.11.53 1.13.11.54]
YGL202W  ARO8; bifunctional 2-aminoadipate transaminase/aromatic-amino-acid:2-oxoglutarate transaminase [KO:K00838] [EC:2.6.1.57 2.6.1.39 2.6.1.27 2.6.1.5]
YKL069W  YKG9; L-methionine (R)-S-oxide reductase [KO:K08968] [EC:1.8.4.14]
YER043C  SAH1; adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
YER052C  HOM3; aspartate kinase [KO:K00928] [EC:2.7.2.4]
YDR158W  HOM2; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
YJR139C  HOM6; homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
YNL277W  MET2; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
YJR130C  STR2; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
YML082W  putative cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
YLL058W  HSU1; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
YHR208W  BAT1; branched-chain-amino-acid transaminase BAT1 [KO:K00826] [EC:2.6.1.42]
YJR148W  BAT2; branched-chain-amino-acid transaminase BAT2 [KO:K00826] [EC:2.6.1.42]
YJL101C  GSH1; glutamate--cysteine ligase [KO:K11204] [EC:6.3.2.2]
YOL049W  GSH2; glutathione synthase [KO:K21456] [EC:6.3.2.3]
YLR027C  AAT2; aspartate transaminase AAT2 [KO:K14454] [EC:2.6.1.1]
YKL106W  AAT1; aspartate transaminase AAT1 [KO:K14455] [EC:2.6.1.1]
YOR251C  TUM1; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
YKL085W  MDH1; malate dehydrogenase MDH1 [KO:K00026] [EC:1.1.1.37]
YOL126C  MDH2; malate dehydrogenase MDH2 [KO:K00026] [EC:1.1.1.37]
YDL078C  MDH3; malate dehydrogenase MDH3 [KO:K00026] [EC:1.1.1.37]
YCL064C  CHA1; L-serine/L-threonine ammonia-lyase CHA1 [KO:K17989] [EC:4.3.1.17 4.3.1.19]
YER081W  SER3; phosphoglycerate dehydrogenase SER3 [KO:K00058] [EC:1.1.1.95 1.1.1.399]
YIL074C  SER33; phosphoglycerate dehydrogenase SER33 [KO:K00058] [EC:1.1.1.95 1.1.1.399]
YOR184W  SER1; O-phospho-L-serine:2-oxoglutarate transaminase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
sce00010  Glycolysis / Gluconeogenesis
sce00250  Alanine, aspartate and glutamate metabolism
sce00260  Glycine, serine and threonine metabolism
sce00290  Valine, leucine and isoleucine biosynthesis
sce00430  Taurine and hypotaurine metabolism
sce00480  Glutathione metabolism
sce00620  Pyruvate metabolism
sce00640  Propanoate metabolism
sce00770  Pantothenate and CoA biosynthesis
sce00900  Terpenoid backbone biosynthesis
sce00920  Sulfur metabolism
KO pathway
ko00270   
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