KEGG   PATHWAY: soc03420
Entry
soc03420                    Pathway                                
Name
Nucleotide excision repair - Solenopsis invicta (red fire ant)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
soc03420  Nucleotide excision repair
soc03420

Other DBs
GO: 0006289
Organism
Solenopsis invicta (red fire ant) [GN:soc]
Gene
105192811  [KO:K03506] [EC:2.7.7.7]
105192888  [KO:K02325] [EC:2.7.7.7]
105192974  [KO:K07466]
105193101  [KO:K03017]
105193452  [KO:K10842]
105193755  [KO:K10846]
105194065  [KO:K10841]
105194365  [KO:K10755]
105194466  [KO:K03013]
105194692  [KO:K06634]
105195164  [KO:K03868] [EC:2.3.2.32]
105195840  [KO:K10755]
105196003  [KO:K03143]
105196196  [KO:K03010] [EC:2.7.7.6]
105196502  [KO:K04802]
105196577  [KO:K10839]
105196868  [KO:K10756]
105196940  [KO:K03011]
105198186  [KO:K02327] [EC:2.7.7.7]
105198312  [KO:K03015]
105198415  [KO:K10838]
105198875  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
105199658  [KO:K02324] [EC:2.7.7.7]
105199755  [KO:K02328]
105200408  [KO:K03016]
105200694  [KO:K10756]
105200728  [KO:K10848] [EC:3.1.-.-]
105200799  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
105201249  [KO:K10610]
105201408  [KO:K02328]
105201760  [KO:K10609]
105202062  [KO:K10739]
105202108  [KO:K03008]
105202304  [KO:K10847]
105202404  [KO:K21987]
105202499  [KO:K10843] [EC:5.6.2.4]
105203122  [KO:K03014]
105203200  [KO:K02326] [EC:2.7.7.7]
105203889  [KO:K03006] [EC:2.7.7.6]
105204149  [KO:K03141]
105204634  [KO:K10844] [EC:5.6.2.3]
105205681  [KO:K03504]
105205815  [KO:K10754]
105207386  [KO:K03009]
105207825  [KO:K03142]
105208184  [KO:K10849]
105208210  [KO:K03007]
113005264  [KO:K10845]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
soc03020  RNA polymerase
soc04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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