KEGG   PATHWAY: tcc00270
Entry
tcc00270                    Pathway                                
Name
Cysteine and methionine metabolism - Theobroma cacao (cacao)
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
tcc00270  Cysteine and methionine metabolism
tcc00270

Module
tcc_M00021  Cysteine biosynthesis, serine => cysteine [PATH:tcc00270]
tcc_M00034  Methionine salvage pathway [PATH:tcc00270]
tcc_M00368  Ethylene biosynthesis, methionine => ethylene [PATH:tcc00270]
Other DBs
GO: 0006534 0006555
Organism
Theobroma cacao (cacao) [GN:tcc]
Gene
18610663  serine acetyltransferase 2 [KO:K00640] [EC:2.3.1.30]
18588427  serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
18593316  serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
18597312  serine acetyltransferase 1, chloroplastic [KO:K00640] [EC:2.3.1.30]
18600261  bifunctional L-3-cyanoalanine synthase/cysteine synthase D1 [KO:K01738] [EC:2.5.1.47]
18602993  cysteine synthase [KO:K01738] [EC:2.5.1.47]
18602339  cysteine synthase, chloroplastic/chromoplastic [KO:K01738] [EC:2.5.1.47]
18600255  cysteine synthase [KO:K01738] [EC:2.5.1.47]
18593298  cysteine synthase 2 [KO:K01738] [EC:2.5.1.47]
18614120  bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial [KO:K13034] [EC:2.5.1.47 4.4.1.9]
18598782  cystathionine beta-lyase, chloroplastic [KO:K01760] [EC:4.4.1.13]
18613297  homocysteine S-methyltransferase 2 [KO:K00547] [EC:2.1.1.10]
18609262  homocysteine S-methyltransferase 1 [KO:K00547] [EC:2.1.1.10]
18603031  homocysteine S-methyltransferase 3 [KO:K00547] [EC:2.1.1.10]
18590143  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
18599818  5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
18613784  S-adenosylmethionine synthase 2 [KO:K00789] [EC:2.5.1.6]
18603754  S-adenosylmethionine synthase 2 [KO:K00789] [EC:2.5.1.6]
18600625  S-adenosylmethionine synthase 1 [KO:K00789] [EC:2.5.1.6]
18598034  S-adenosylmethionine synthase 4 [KO:K00789] [EC:2.5.1.6]
108660415  S-adenosylmethionine decarboxylase proenzyme-like [KO:K01611] [EC:4.1.1.50]
18610119  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
108660413  S-adenosylmethionine decarboxylase proenzyme [KO:K01611] [EC:4.1.1.50]
18603379  S-adenosylmethionine decarboxylase proenzyme 4 [KO:K01611] [EC:4.1.1.50]
18603875  spermidine synthase 2 [KO:K00797] [EC:2.5.1.16]
18609400  spermidine synthase [KO:K00797] [EC:2.5.1.16]
18603873  spermidine synthase 1 [KO:K00797] [EC:2.5.1.16]
18605732  spermine synthase [KO:K00797] [EC:2.5.1.16]
18603633  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
18600574  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
18589241  nicotianamine synthase [KO:K05953] [EC:2.5.1.43]
18607620  5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 [KO:K01244] [EC:3.2.2.16]
18608018  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
18608022  methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
18588261  methylthioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]
18608727  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 2 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
18594005  probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [KO:K16054] [EC:4.2.1.109 3.1.3.77]
18603054  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
18603053  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [KO:K08967] [EC:1.13.11.53 1.13.11.54]
18592299  probable N-succinyldiaminopimelate aminotransferase DapC [KO:K23977] [EC:2.6.1.117]
18608756  tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
18608751  tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
18608750  tyrosine aminotransferase [KO:K00815] [EC:2.6.1.5]
18594061  probable aminotransferase TAT2 [KO:K00815] [EC:2.6.1.5]
18595848  aspartate aminotransferase [KO:K00837] [EC:2.6.1.-]
18588940  aspartate aminotransferase [KO:K00837] [EC:2.6.1.-]
18605977  methionine gamma-lyase [KO:K01761] [EC:4.4.1.11]
18607154  putative DNA (cytosine-5)-methyltransferase CMT1 [KO:K00558] [EC:2.1.1.37]
18611994  DNA (cytosine-5)-methyltransferase 1 [KO:K00558] [EC:2.1.1.37]
18606863  DNA (cytosine-5)-methyltransferase CMT2 [KO:K00558] [EC:2.1.1.37]
18589648  DNA (cytosine-5)-methyltransferase CMT3 [KO:K00558] [EC:2.1.1.37]
18593109  uncharacterized LOC18593109 [KO:K17398] [EC:2.1.1.37]
18602642  adenosylhomocysteinase [KO:K01251] [EC:3.13.2.1]
18605016  adenosylhomocysteinase 1 [KO:K01251] [EC:3.13.2.1]
18614078  1-aminocyclopropane-1-carboxylate synthase [KO:K20772] [EC:4.4.1.14]
18606590  1-aminocyclopropane-1-carboxylate synthase [KO:K20772] [EC:4.4.1.14]
18591920  1-aminocyclopropane-1-carboxylate synthase 3 [KO:K01762] [EC:4.4.1.14]
18611347  1-aminocyclopropane-1-carboxylate synthase 3 [KO:K01762] [EC:4.4.1.14]
18588438  1-aminocyclopropane-1-carboxylate synthase 7 [KO:K01762] [EC:4.4.1.14]
18612358  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
18588418  1-aminocyclopropane-1-carboxylate oxidase 1 [KO:K05933] [EC:1.14.17.4]
18592410  1-aminocyclopropane-1-carboxylate oxidase 5 [KO:K05933] [EC:1.14.17.4]
18597239  1-aminocyclopropane-1-carboxylate oxidase [KO:K05933] [EC:1.14.17.4]
18608852  aspartokinase 1, chloroplastic [KO:K00928] [EC:2.7.2.4]
18601121  aspartokinase 2, chloroplastic [KO:K00928] [EC:2.7.2.4]
18592903  bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [KO:K12524] [EC:2.7.2.4 1.1.1.3]
18610051  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
18601561  cystathionine gamma-synthase 1, chloroplastic [KO:K01739] [EC:2.5.1.48]
18607289  branched-chain-amino-acid aminotransferase 6 [KO:K00826] [EC:2.6.1.42]
18611350  branched-chain-amino-acid aminotransferase 3, chloroplastic [KO:K00826] [EC:2.6.1.42]
18607290  branched-chain-amino-acid aminotransferase 6 [KO:K00826] [EC:2.6.1.42]
18591915  branched-chain-amino-acid aminotransferase 2, chloroplastic [KO:K00826] [EC:2.6.1.42]
18591913  branched-chain-amino-acid aminotransferase 5, chloroplastic [KO:K00826] [EC:2.6.1.42]
18591916  branched-chain-amino-acid aminotransferase 2, chloroplastic [KO:K00826] [EC:2.6.1.42]
18611649  alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
18602267  alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial [KO:K00827] [EC:2.6.1.44 2.6.1.40]
18606518  glutamate--cysteine ligase, chloroplastic [KO:K01919] [EC:6.3.2.2]
18609053  glutathione synthetase, chloroplastic [KO:K21456] [EC:6.3.2.3]
18588579  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
18587936  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
18587937  aspartate aminotransferase, cytoplasmic [KO:K14454] [EC:2.6.1.1]
18612074  aspartate aminotransferase, mitochondrial [KO:K14455] [EC:2.6.1.1]
18587732  aspartate aminotransferase, chloroplastic [KO:K00811] [EC:2.6.1.1]
18594871  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial [KO:K01011] [EC:2.8.1.1 2.8.1.2]
18606285  L-lactate dehydrogenase B [KO:K00016] [EC:1.1.1.27]
18604491  bifunctional D-cysteine desulfhydrase/1-aminocyclopropane-1-carboxylate deaminase, mitochondrial [KO:K05396] [EC:4.4.1.15]
18609626  D-cysteine desulfhydrase 2, mitochondrial [KO:K05396] [EC:4.4.1.15]
18613807  L-cysteine desulfhydrase [KO:K22207] [EC:4.4.1.28]
18600637  probable L-cysteine desulfhydrase, chloroplastic [KO:K22207] [EC:4.4.1.28]
18614398  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
18603218  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
18607305  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18611372  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18604702  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18594136  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18596725  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18599769  probable S-sulfocysteine synthase, chloroplastic [KO:K22846] [EC:2.5.1.144]
18607999  D-3-phosphoglycerate dehydrogenase 3, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
18595195  D-3-phosphoglycerate dehydrogenase 1, chloroplastic [KO:K00058] [EC:1.1.1.95 1.1.1.399]
18610661  phosphoserine aminotransferase 2, chloroplastic [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
tcc00010  Glycolysis / Gluconeogenesis
tcc00250  Alanine, aspartate and glutamate metabolism
tcc00260  Glycine, serine and threonine metabolism
tcc00290  Valine, leucine and isoleucine biosynthesis
tcc00430  Taurine and hypotaurine metabolism
tcc00480  Glutathione metabolism
tcc00620  Pyruvate metabolism
tcc00640  Propanoate metabolism
tcc00770  Pantothenate and CoA biosynthesis
tcc00900  Terpenoid backbone biosynthesis
tcc00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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