KEGG   PATHWAY: tfn04137
Entry
tfn04137                    Pathway                                
Name
Mitophagy - animal - Trachypithecus francoisi (Francois's langur)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
tfn04137  Mitophagy - animal
tfn04137

Other DBs
GO: 0000422
Organism
Trachypithecus francoisi (Francois's langur) [GN:tfn]
Gene
117062173  EIF2AK3; eukaryotic translation initiation factor 2-alpha kinase 3 isoform X1 [KO:K08860] [EC:2.7.11.1]
117062294  RPS27A; LOW QUALITY PROTEIN: ubiquitin-40S ribosomal protein S27a [KO:K02977]
117064347  SQSTM1; sequestosome-1 isoform X1 [KO:K14381]
117065387  MTX3; metaxin-3 isoform X1 [KO:K17776]
117065429  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
117066421  UBB; polyubiquitin-B isoform X1 [KO:K04551]
117066918  NBR1; next to BRCA1 gene 1 protein isoform X1 [KO:K17987]
117066937  BECN1; beclin-1 isoform X1 [KO:K08334]
117066969  RAB5C; ras-related protein Rab-5C [KO:K07889]
117067175  CALCOCO2; calcium-binding and coiled-coil domain-containing protein 2 [KO:K21348]
117067413  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
117067548  RHOT1; mitochondrial Rho GTPase 1 isoform X1 [KO:K07870] [EC:3.6.5.-]
117067758  TP53; cellular tumor antigen p53 isoform X1 [KO:K04451]
117067806  GABARAP; gamma-aminobutyric acid receptor-associated protein [KO:K08341]
117068593  CSNK2A1; casein kinase II subunit alpha isoform X1 [KO:K03097] [EC:2.7.11.1]
117068616  BCL2L1; bcl-2-like protein 1 isoform X1 [KO:K04570]
117068658  E2F1; LOW QUALITY PROTEIN: transcription factor E2F1 [KO:K17454]
117068677  MAP1LC3A; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435]
117068749  SRC; proto-oncogene tyrosine-protein kinase Src [KO:K05704] [EC:2.7.10.2]
117069444  EIF2S1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
117069504  HIF1A; hypoxia-inducible factor 1-alpha isoform X1 [KO:K08268]
117069570  TOMM20L; TOMM20-like protein 1 isoform X1 [KO:K17770]
117070398  ARIH1; E3 ubiquitin-protein ligase ARIH1 [KO:K11968] [EC:2.3.2.31]
117070668  USP8; ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
117071533  [KO:K08341]
117072006  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
117072046  TAX1BP1; tax1-binding protein 1 isoform X1 [KO:K21347]
117072350  FIS1; mitochondrial fission 1 protein [KO:K17969]
117072566  TOMM7; mitochondrial import receptor subunit TOM7 homolog [KO:K17771]
117072601  ATG9B; autophagy-related protein 9B isoform X1 [KO:K17907]
117072764  [KO:K08341]
117072919  RABGEF1; rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
117073575  [KO:K08770]
117074192  [KO:K02977]
117074335  BECN2; beclin-2 [KO:K08334]
117074617  [KO:K17776]
117074618  [KO:K17776]
117074634  NRAS; GTPase NRas [KO:K07828]
117074638  TOMM40L; mitochondrial import receptor subunit TOM40B [KO:K11518]
117074938  RAB7B; ras-related protein Rab-7b [KO:K07898]
117074955  MAP1LC3C; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435]
117075959  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
117075962  FKBP8; peptidyl-prolyl cis-trans isomerase FKBP8 isoform X1 [KO:K09574] [EC:5.2.1.8]
117076137  TOMM20; mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
117077211  TFE3; LOW QUALITY PROTEIN: transcription factor E3 [KO:K09105]
117077586  [KO:K07887]
117077975  FUNDC1; FUN14 domain-containing protein 1 [KO:K17986]
117078040  [KO:K04506] [EC:2.3.2.27]
117078124  HUWE1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
117079590  [KO:K02927]
117079889  AMBRA1; activating molecule in BECN1-regulated autophagy protein 1 isoform X1 [KO:K17985]
117079934  NLRX1; NLR family member X1 isoform X1 [KO:K12653]
117080264  [KO:K02977]
117081405  RELA; transcription factor p65 [KO:K04735]
117081560  RRAS2; ras-related protein R-Ras2 isoform X1 [KO:K07830]
117081688  HRAS; GTPase HRas isoform X1 [KO:K02833]
117081715  MON1A; vacuolar fusion protein MON1 homolog A isoform X1 [KO:K20195]
117081965  OPTN; optineurin [KO:K19946]
117082566  BNIP3; LOW QUALITY PROTEIN: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
117082864  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
117083122  MITF; microphthalmia-associated transcription factor isoform X1 [KO:K09455]
117083336  RAB7A; ras-related protein Rab-7a [KO:K07897]
117083600  TOMM70; mitochondrial import receptor subunit TOM70 [KO:K17768]
117083765  MFN1; mitofusin-1 [KO:K21356] [EC:3.6.5.-]
117084132  MRAS; ras-related protein M-Ras isoform X1 [KO:K07831]
117084230  RAB5A; ras-related protein Rab-5A [KO:K07887]
117084398  OPA1; dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
117085362  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
117085673  [KO:K02927]
117086944  CSNK2B; casein kinase II subunit beta isoform X1 [KO:K03115]
117087200  TFEB; transcription factor EB isoform X1 [KO:K15590]
117087754  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
117087768  [KO:K02977]
117087808  AMFR; E3 ubiquitin-protein ligase AMFR isoform X1 [KO:K10636] [EC:2.3.2.36]
117087870  CSNK2A2; casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
117088066  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 isoform X1 [KO:K08341]
117088075  [KO:K02927]
117088081  MON1B; vacuolar fusion protein MON1 homolog B isoform X1 [KO:K20195]
117088175  MAP1LC3B; microtubule-associated proteins 1A/1B light chain 3B [KO:K10435]
117089144  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial isoform X1 [KO:K15637] [EC:3.1.3.16]
117089166  ULK1; serine/threonine-protein kinase ULK1 isoform X1 [KO:K21357] [EC:2.7.11.1]
117089196  UBC; LOW QUALITY PROTEIN: polyubiquitin-C [KO:K08770]
117089444  USP30; ubiquitin carboxyl-terminal hydrolase 30 isoform X1 [KO:K11851] [EC:3.4.19.12]
117089734  TBC1D15; TBC1 domain family member 15 isoform X1 [KO:K20168]
117089816  TBK1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
117089838  USP15; ubiquitin carboxyl-terminal hydrolase 15 isoform X1 [KO:K21343] [EC:3.4.19.12]
117089963  RAB5B; ras-related protein Rab-5B [KO:K07888]
117090035  SP1; transcription factor Sp1 [KO:K04684]
117090562  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 isoform X1 [KO:K08341]
117090597  PHB2; prohibitin-2 [KO:K17081]
117090963  MAP1LC3B2; LOW QUALITY PROTEIN: microtubule-associated proteins 1A/1B light chain 3 beta 2 [KO:K10435]
117091371  TOMM40; mitochondrial import receptor subunit TOM40 homolog [KO:K11518]
117091587  RRAS; ras-related protein R-Ras isoform X1 [KO:K07829]
117091602  TBC1D17; TBC1 domain family member 17 isoform X1 [KO:K19945]
117091711  MARCHF5; E3 ubiquitin-protein ligase MARCH5 [KO:K10660] [EC:2.3.2.27]
117091985  JUN; transcription factor AP-1 [KO:K04448]
117093184  PINK1; serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
117093189  MUL1; mitochondrial ubiquitin ligase activator of NFKB 1 [KO:K15688] [EC:2.3.2.27]
117093304  MFN2; mitofusin-2 isoform X1 [KO:K06030] [EC:3.6.5.-]
117093685  BNIP3L; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like isoform X1 [KO:K15465]
117094492  ATG9A; autophagy-related protein 9A [KO:K17907]
117094818  MTX2; metaxin-2 isoform X1 [KO:K17776]
117096072  BCL2L13; bcl-2-like protein 13 isoform X1 [KO:K15485]
117096351  SAMM50; sorting and assembly machinery component 50 homolog isoform X1 [KO:K07277]
117096463  ATF4; cyclic AMP-dependent transcription factor ATF-4 [KO:K04374]
117096908  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
117097175  FOXO3; LOW QUALITY PROTEIN: forkhead box protein O3 [KO:K09408]
117097448  CITED2; cbp/p300-interacting transactivator 2 [KO:K21361]
117097896  RHOT2; mitochondrial Rho GTPase 2 isoform X1 [KO:K07871] [EC:3.6.5.-]
117099028  VCP; transitional endoplasmic reticulum ATPase isoform X1 [KO:K13525]
117099135  TRAF2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
117099658  [KO:K02977]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
tfn04140  Autophagy - animal
tfn04210  Apoptosis
KO pathway
ko04137   

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